Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.9e-109 397.1 253 100.0
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.9e-105 385.2 250 94.8
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.1e-102 377.1 250 93.6
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 2.4e-102 375.9 250 93.6
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.2e-101 373.6 250 93.6
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.5e-91 339.3 224 94.2
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 7.2e-75 284.6 244 62.3
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 3.5e-69 265.8 232 79.3
FAN10G2891 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.2e-53 214.2 161 99.4
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.2e-42 177.6 243 44.4
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.8e-42 176.4 235 43.8
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.2e-39 166.8 238 45.4
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 3.7e-39 166.0 242 44.2
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 1.1e-38 164.5 243 42.0
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 5.4e-38 162.2 237 43.0
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 6.0e-37 158.7 239 42.3
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 6.0e-37 158.7 242 43.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.3e-36 157.5 232 44.0
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 5.0e-36 155.6 99 69.7
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 8.6e-36 154.8 113 66.4
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 8.6e-36 154.8 207 44.4
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 8.6e-36 154.8 235 41.3
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.1e-35 154.5 236 41.1
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 2.5e-35 153.3 239 40.6
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 3.3e-35 152.9 235 39.6
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 5.6e-35 152.1 90 74.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.2e-34 151.0 206 41.3
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.2e-34 151.0 92 75.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.2e-34 151.0 121 63.6
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.6e-34 150.6 234 41.9
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.6e-34 150.6 107 69.2
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 2.1e-34 150.2 234 40.6
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 3.6e-34 149.4 108 65.7
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 3.6e-34 149.4 234 41.9
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 6.2e-34 148.7 236 40.3
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 6.2e-34 148.7 104 63.5
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 8.0e-34 148.3 100 69.0
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.1e-33 147.9 92 75.0
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.1e-33 147.9 235 39.6
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.1e-33 147.9 99 69.7
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.1e-33 147.9 107 63.6
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 1.4e-33 147.5 99 68.7
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.8e-33 147.1 242 40.9
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 2.3e-33 146.7 99 69.7
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 2.3e-33 146.7 92 72.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.3e-33 146.7 231 40.7
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 2.3e-33 146.7 233 39.9
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.3e-33 146.7 101 68.3
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 3.1e-33 146.4 91 73.6
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 4.0e-33 146.0 109 64.2
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 5.2e-33 145.6 92 73.9
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 5.2e-33 145.6 99 68.7
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 5.2e-33 145.6 109 60.6
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 6.8e-33 145.2 92 73.9
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 6.8e-33 145.2 98 69.4
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 8.9e-33 144.8 119 60.5
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 8.9e-33 144.8 99 68.7
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 8.9e-33 144.8 99 65.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 8.9e-33 144.8 204 40.7
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 8.9e-33 144.8 99 68.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.2e-32 144.4 98 68.4
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.2e-32 144.4 105 62.9
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.2e-32 144.4 112 63.4
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-32 143.7 102 65.7
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-32 143.7 102 65.7
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-32 143.7 102 65.7
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 2.6e-32 143.3 123 60.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.6e-32 143.3 107 59.8
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.4e-32 142.9 91 72.5
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 3.4e-32 142.9 99 65.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.4e-32 142.9 99 65.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 4.4e-32 142.5 91 73.6
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 4.4e-32 142.5 99 64.6
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 4.4e-32 142.5 101 66.3
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 4.4e-32 142.5 108 61.1
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 5.8e-32 142.1 94 70.2
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 5.8e-32 142.1 91 72.5
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 7.5e-32 141.7 111 59.5
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 9.8e-32 141.4 92 71.7
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 9.8e-32 141.4 91 73.6
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 9.8e-32 141.4 91 70.3
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 2.2e-31 140.2 90 70.0
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 4.9e-31 139.0 98 64.3
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 6.4e-31 138.7 94 67.0
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 6.4e-31 138.7 96 64.6
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 8.3e-31 138.3 99 65.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 8.3e-31 138.3 99 62.6
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 8.3e-31 138.3 98 62.2
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.9e-30 137.1 96 65.6
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 4.1e-30 136.0 112 57.1
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 7.0e-30 135.2 103 58.3
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 7.0e-30 135.2 103 58.3
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 7.0e-30 135.2 103 58.3
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 9.2e-30 134.8 92 69.6
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.2e-30 134.8 91 67.0
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.6e-29 134.0 91 62.6
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 2.0e-29 133.7 96 61.5
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 2.0e-29 133.7 96 61.5
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 2.0e-29 133.7 96 61.5
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 2.0e-29 133.7 96 61.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.5e-29 132.9 92 68.5
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 4.6e-29 132.5 107 57.9
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 4.6e-29 132.5 96 62.5
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 4.6e-29 132.5 94 62.8
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 4.6e-29 132.5 96 60.4
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 4.6e-29 132.5 103 56.3
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 6.0e-29 132.1 103 56.3
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 6.0e-29 132.1 93 66.7
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 7.8e-29 131.7 97 62.9
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.0e-28 131.3 91 67.0
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 6.6e-28 128.6 91 67.0
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 6.6e-28 128.6 96 62.5
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.3e-27 125.9 219 37.4
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 5.6e-27 125.6 81 71.6
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 4.7e-26 122.5 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 3.1e-25 119.8 87 62.1
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 8.3e-23 111.7 91 53.8
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.1e-22 111.3 89 55.1
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 1.4e-22 110.9 74 67.6
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 2.7e-21 106.7 86 53.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 8.6e-20 101.7 72 59.7
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 7.3e-19 98.6 107 43.9
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 4.4e-16 89.4 95 43.2
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.7e-15 87.4 103 46.6
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 3.8e-15 86.3 96 45.8
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.4e-15 85.1 91 48.4
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 8.7e-12 75.1 61 55.7
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 2.5e-11 73.6 63 55.6
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.3e-11 73.2 89 46.1
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 4.3e-11 72.8 57 54.4
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 9.0e-09 65.1 78 38.5
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 1.2e-08 64.7 75 38.7
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 1.2e-08 64.7 81 38.3
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.4e-08 62.8 63 50.8
HanXRQChr11g0335291 Helianthus annuus HOM05D002826 ORTHO05D003105 5.8e-08 62.4 85 36.5
Lsat_1_v5_gn_4_20381 Lactuca sativa HOM05D002826 ORTHO05D003105 5.8e-08 62.4 75 40.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 7.6e-08 62.0 74 39.2
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 7.6e-08 62.0 46 63.0
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 9.9e-08 61.6 85 36.5
Actinidia30164 Actinidia chinensis HOM05D000508 ORTHO05D000371 2.2e-07 60.5 67 43.3
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 2.2e-07 60.5 74 37.8
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 2.2e-07 60.5 74 37.8
SalBow8G2187 Salvia bowleyana HOM05D002826 ORTHO05D003105 2.2e-07 60.5 72 37.5
Manes.14G095500 Manihot esculenta HOM05D002826 ORTHO05D003105 2.9e-07 60.1 80 37.5
Nitab4.5_0010558g0030 Nicotiana tabacum HOM05D002826 ORTHO05D003105 2.9e-07 60.1 67 41.8
CAN.G184.64 Capsicum annuum HOM05D002826 ORTHO05D003105 3.8e-07 59.7 60 45.0
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 3.8e-07 59.7 59 45.8
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.8e-07 59.7 90 38.9
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 3.8e-07 59.7 61 41.0
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 3.8e-07 59.7 69 37.7
Medtr4g045783 Medicago truncatula HOM05D002826 ORTHO05D003105 4.9e-07 59.3 74 36.5
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 4.9e-07 59.3 70 41.4
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 6.4e-07 58.9 60 41.7
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 6.4e-07 58.9 75 38.7
AagrBONN_evm.TU.Sc2ySwM_369.238 Anthoceros agrestis HOM05D002826 ORTHO05D003105 8.4e-07 58.5 61 41.0
Cc11_g10940 Coffea canephora HOM05D002826 ORTHO05D003105 8.4e-07 58.5 60 43.3
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 8.4e-07 58.5 54 44.4
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 8.4e-07 58.5 54 44.4
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 8.4e-07 58.5 54 44.4
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 8.4e-07 58.5 54 44.4
Peaxi162Scf00198g00412 Petunia axillaris HOM05D002826 ORTHO05D003105 8.4e-07 58.5 67 38.8
Solyc05g010070.3 Solanum lycopersicum HOM05D002826 ORTHO05D003105 8.4e-07 58.5 67 38.8
PGSC0003DMG400025127 Solanum tuberosum HOM05D000508 ORTHO05D000371 8.4e-07 58.5 67 38.8
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 1.4e-06 57.8 54 42.6
TPR.G2677 Trifolium pratense HOM05D002826 ORTHO05D003105 1.9e-06 57.4 74 35.1
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 3.2e-06 56.6 54 42.6
Sopen05g005870 Solanum pennellii HOM05D002826 ORTHO05D003105 3.2e-06 56.6 54 42.6
TWI75G1715 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 3.2e-06 56.6 73 38.4
ATR0743G230 Amborella trichopoda HOM05D002826 ORTHO05D003105 4.2e-06 56.2 60 41.7
Psat2g088920 Pisum sativum HOM05D002826 ORTHO05D003105 4.2e-06 56.2 54 40.7
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 4.2e-06 56.2 54 42.6
Hund25117 Selenicereus undatus HOM05D002826 ORTHO05D003105 9.3e-06 55.1 54 44.4


User provided reference genes

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