Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.0e-140 503.4 257 100.0
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.0e-140 503.4 257 100.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.5e-139 498.8 257 98.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.5e-139 498.8 257 98.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 3.2e-139 498.4 257 98.8
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.2e-139 498.0 257 98.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 2.3e-137 492.3 257 96.9
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 7.2e-123 444.1 261 87.4
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.4e-121 439.9 263 84.0
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 7.5e-120 434.1 261 85.8
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.2e-104 383.6 263 76.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 5.7e-104 381.3 262 76.0
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 4.9e-103 378.3 262 75.2
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 3.1e-102 375.6 262 72.9
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.3e-100 370.2 268 72.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.3e-100 369.4 264 72.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 8.6e-100 367.5 262 75.6
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.9e-99 366.3 263 73.0
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.2e-98 363.6 259 72.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.1e-98 362.8 266 72.9
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.1e-98 362.8 261 72.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.8e-98 362.5 259 72.6
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.8e-98 362.5 259 72.6
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-98 362.5 190 97.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 8.0e-98 360.9 262 71.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.8e-97 359.8 259 72.2
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.8e-97 359.8 262 72.1
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 4.0e-97 358.6 263 71.5
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 6.8e-97 357.8 257 72.8
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.2e-96 357.1 263 70.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.2e-96 357.1 262 71.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.4e-96 355.5 263 70.3
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.4e-96 355.1 264 70.8
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-95 353.6 264 70.5
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.3e-95 353.6 266 69.5
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.7e-95 353.2 270 70.4
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.7e-95 353.2 264 68.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 2.2e-95 352.8 268 71.3
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 4.9e-95 351.7 270 70.7
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.9e-95 351.7 264 70.5
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 4.9e-95 351.7 264 70.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 6.4e-95 351.3 266 69.9
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 6.4e-95 351.3 263 68.8
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.1e-94 350.5 264 70.1
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 4.1e-94 348.6 259 69.9
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.1e-94 348.6 271 69.0
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 5.4e-94 348.2 258 70.2
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.4e-94 348.2 260 70.8
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 7.0e-94 347.8 264 68.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.2e-93 347.1 266 68.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 5.9e-93 344.7 260 70.0
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 7.8e-93 344.4 260 70.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.8e-93 344.4 261 68.6
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.3e-92 343.6 258 67.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.7e-92 343.2 261 67.4
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 2.3e-92 342.8 267 69.7
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.0e-92 342.4 259 69.5
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 5.0e-92 341.7 260 68.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.9e-91 339.7 253 71.1
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 3.3e-91 339.0 262 68.7
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.3e-91 339.0 253 71.1
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 3.3e-91 339.0 254 70.1
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 5.6e-91 338.2 264 67.8
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 5.6e-91 338.2 258 69.8
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 5.6e-91 338.2 262 69.5
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 7.3e-91 337.8 258 68.2
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.3e-91 337.8 260 69.2
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 2.1e-90 336.3 262 69.5
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.6e-90 335.5 257 69.6
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 6.2e-90 334.7 241 72.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.0e-89 334.0 243 71.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.0e-89 334.0 243 71.2
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.4e-89 333.6 253 68.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.8e-89 333.2 258 68.6
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.8e-89 333.2 264 66.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.3e-89 332.8 261 67.0
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.1e-89 332.4 270 64.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.0e-89 332.0 259 66.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 5.2e-89 331.6 266 64.7
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 6.8e-89 331.3 265 66.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 8.9e-89 330.9 259 66.4
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 8.9e-89 330.9 268 67.9
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.0e-88 329.7 265 65.7
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.6e-88 329.3 266 65.8
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 3.4e-88 328.9 256 68.4
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 5.8e-88 328.2 262 66.0
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 9.8e-88 327.4 261 67.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 9.8e-88 327.4 256 67.2
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.9e-87 325.9 262 67.6
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.9e-87 325.1 261 67.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 5.4e-86 321.6 258 65.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.0e-85 319.7 224 69.6
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 2.7e-85 319.3 259 66.0
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 6.6e-84 314.7 226 70.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.5e-83 313.5 249 64.3
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 5.2e-81 305.1 234 69.2
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 6.8e-81 304.7 309 57.3
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.6e-80 302.8 195 74.9
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.4e-78 297.0 225 65.8
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.2e-77 293.9 259 60.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.0e-76 290.8 262 63.0
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.5e-75 287.0 197 74.1
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.5e-75 287.0 197 74.1
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.3e-73 279.6 254 59.8
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 5.8e-72 275.0 179 77.1
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 9.9e-72 274.2 217 62.2
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 7.1e-70 268.1 215 60.9
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.2e-64 250.8 215 59.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.9e-63 246.1 234 53.8
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.9e-62 243.4 238 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.2e-61 240.7 191 60.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.6e-61 240.4 202 55.4
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.0e-60 237.7 233 56.7
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.1e-60 235.3 180 62.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 5.3e-57 225.3 176 69.9
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.6e-53 213.8 141 70.9
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.5e-48 197.2 132 75.8
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.4e-41 174.1 153 53.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-40 170.2 152 64.5
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 5.5e-38 162.2 165 47.9
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 9.3e-38 161.4 262 42.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 9.3e-38 161.4 262 42.0
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-37 160.6 262 42.0
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 5.7e-35 152.1 114 69.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.2e-29 134.4 89 76.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.6e-29 132.5 112 59.8
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.8e-26 122.5 179 38.0
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.8e-25 120.6 76 78.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.5e-19 100.9 79 68.4
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.2e-16 91.3 168 31.5
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.9e-16 89.0 75 62.7
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.9e-14 84.0 66 66.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.6e-13 80.9 85 60.0
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.8e-12 77.4 41 92.7
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.7e-11 71.6 60 61.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.7e-10 69.7 39 87.2
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.9e-07 60.1 102 41.2
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 4.2e-06 56.2 163 28.2
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 5.5e-06 55.8 48 58.3


User provided reference genes

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