Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-113 414.1 479 100.0
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-81 307.4 169 97.0
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.7e-80 303.1 162 98.1
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.6e-78 297.7 167 94.0
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.6e-43 181.4 102 92.2
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.8e-42 177.9 102 90.2
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.8e-42 177.9 102 90.2
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 6.8e-42 176.0 102 89.2
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.2e-41 175.3 102 89.2
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.8e-41 172.9 102 87.3
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.1e-37 159.8 85 95.3
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.1e-36 158.7 85 95.3
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.1e-36 158.7 85 95.3
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.3e-36 157.1 85 94.1
FAN25G0700 Fragaria x ananassa HOM05D000681 ORTHO05D012645 3.1e-34 150.6 115 73.9
FvH4_6g45001 Fragaria vesca HOM05D011786 ORTHO05D010982 7.8e-30 136.0 72 98.6
FvH4_6g32460 Fragaria vesca HOM05D000040 ORTHO05D010982 2.3e-29 134.4 72 97.2
FAN11G1998 Fragaria x ananassa HOM05D000040 ORTHO05D010982 3.9e-29 133.7 100 76.0
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.1e-29 133.3 74 90.5
FvH4_5g38920 Fragaria vesca HOM05D000040 ORTHO05D010982 6.6e-29 132.9 110 69.1
FAN14G3335 Fragaria x ananassa HOM05D000040 ORTHO05D011996 6.6e-29 132.9 104 72.1
FvH4_1g21841 Fragaria vesca HOM05D000040 ORTHO05D010982 8.6e-29 132.5 72 95.8
FAN06G5114 Fragaria x ananassa HOM05D000040 ORTHO05D010982 8.6e-29 132.5 108 70.4
FvH4_1g11680 Fragaria vesca HOM05D000040 ORTHO05D010982 1.1e-28 132.1 72 95.8
FAN19G2252 Fragaria x ananassa HOM05D000040 ORTHO05D010982 1.1e-28 132.1 72 95.8
FAN14G0767 Fragaria x ananassa HOM05D011786 ORTHO05D011996 1.5e-28 131.7 107 69.2
FAN05G2605 Fragaria x ananassa HOM05D006221 ORTHO05D007759 1.9e-28 131.3 110 69.1
FAN21G0835 Fragaria x ananassa HOM05D006485 ORTHO05D017972 3.3e-28 130.6 72 94.4
FAN25G1020 Fragaria x ananassa HOM05D000040 ORTHO05D010982 3.3e-28 130.6 72 95.8
FAN11G3951 Fragaria x ananassa HOM05D006485 ORTHO05D017972 5.6e-28 129.8 72 93.1
FAN14G0614 Fragaria x ananassa HOM05D006485 ORTHO05D017972 7.3e-28 129.4 72 94.4
FAN05G2245 Fragaria x ananassa HOM05D000040 ORTHO05D010982 1.6e-27 128.3 70 95.7
FAN14G2257 Fragaria x ananassa HOM05D006485 ORTHO05D017972 1.6e-27 128.3 72 93.1
FAN18G2814 Fragaria x ananassa HOM05D011786 ORTHO05D011996 2.1e-27 127.9 72 93.1
FAN27G2695 Fragaria x ananassa HOM05D006485 ORTHO05D017972 1.8e-26 124.8 72 90.3
FAN19G0509 Fragaria x ananassa HOM05D000040 ORTHO05D010982 2.4e-26 124.4 69 94.2
FAN12G4289 Fragaria x ananassa HOM05D006485 ORTHO05D017972 8.9e-26 122.5 106 67.0
FAN09G1261 Fragaria x ananassa HOM05D000040 ORTHO05D010982 5.8e-25 119.8 69 89.9
FAN10G1336 Fragaria x ananassa HOM05D000040 ORTHO05D000759 6.4e-24 116.3 104 67.3
FAN03G1986 Fragaria x ananassa HOM05D000040 ORTHO05D000759 7.1e-23 112.8 104 66.3
FAN01G1232 Fragaria x ananassa HOM05D000040 ORTHO05D000759 9.3e-23 112.5 104 66.3
FAN10G1311 Fragaria x ananassa HOM05D000040 ORTHO05D000759 9.3e-23 112.5 102 66.7
FAN06G0537 Fragaria x ananassa HOM05D000040 ORTHO05D000759 1.9e-20 104.8 103 64.1
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 4.3e-20 103.6 59 86.4
FAN28G0817 Fragaria x ananassa HOM05D011786 ORTHO05D011996 5.6e-20 103.2 72 79.2
FAN22G1073 Fragaria x ananassa HOM05D000681 ORTHO05D012645 2.8e-19 100.9 87 66.7
FAN07G2342 Fragaria x ananassa HOM05D000040 ORTHO05D010982 8.1e-19 99.4 57 91.2
FAN06G0761 Fragaria x ananassa HOM05D000040 ORTHO05D000759 1.1e-18 99.0 102 61.8
FAN21G3847 Fragaria x ananassa HOM05D000040 ORTHO05D010982 1.4e-18 98.6 94 62.8
FAN15G1461 Fragaria x ananassa HOM05D000681 ORTHO05D006108 4.0e-18 97.1 85 65.9
FAN03G0322 Fragaria x ananassa HOM05D011786 ORTHO05D011996 5.3e-18 96.7 72 76.4
FAN11G2403 Fragaria x ananassa HOM05D000040 ORTHO05D010982 6.9e-18 96.3 94 61.7
FAN25G1048 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.9e-18 96.3 85 65.9
FAN06G3135 Fragaria x ananassa HOM05D000681 ORTHO05D011778 1.2e-17 95.5 85 64.7
FAN12G0323 Fragaria x ananassa HOM05D000040 ORTHO05D010982 1.2e-17 95.5 56 89.3
FAN28G1994 Fragaria x ananassa HOM05D000681 ORTHO05D006108 1.2e-17 95.5 85 64.7
FAN06G0460 Fragaria x ananassa HOM05D011786 ORTHO05D204603 1.5e-17 95.1 73 76.7
FAN28G0269 Fragaria x ananassa HOM05D011786 ORTHO05D011996 2.6e-17 94.4 72 75.0
FAN11G1191 Fragaria x ananassa HOM05D000040 ORTHO05D010982 2.2e-16 91.3 88 59.1
RcHm_v2.0_Chr1g0359821 Rosa chinensis HOM05D000040 ORTHO05D000759 6.4e-16 89.7 75 72.0
FAN06G3376 Fragaria x ananassa HOM05D000681 ORTHO05D012645 1.4e-15 88.6 79 64.6
FAN22G1082 Fragaria x ananassa HOM05D000681 ORTHO05D011778 1.4e-15 88.6 79 64.6
FAN24G0338 Fragaria x ananassa HOM05D000681 ORTHO05D011778 1.4e-15 88.6 79 64.6
FAN06G1871 Fragaria x ananassa HOM05D000681 ORTHO05D003965 2.7e-14 84.3 77 63.6
FAN02G2370 Fragaria x ananassa HOM05D011786 ORTHO05D017972 3.5e-14 84.0 88 60.2
FAN02G3025 Fragaria x ananassa HOM05D000040 ORTHO05D000759 4.6e-14 83.6 89 60.7
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 5.6e-12 76.6 97 47.4
FAN01G3053 Fragaria x ananassa HOM05D001223 ORTHO05D001058 7.4e-12 76.3 73 90.4
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 9.6e-12 75.9 98 49.0
FAN07G0206 Fragaria x ananassa HOM05D006485 ORTHO05D206280 2.4e-10 71.2 72 61.1
FAN06G5010 Fragaria x ananassa HOM05D006485 ORTHO05D202060 5.3e-10 70.1 37 94.6
FAN13G2588 Fragaria x ananassa HOM05D001223 ORTHO05D001058 6.9e-10 69.7 73 58.9
FAN04G0819 Fragaria x ananassa HOM05D000012 ORTHO05D000540 1.5e-09 68.6 73 86.3
FAN09G4285 Fragaria x ananassa HOM05D000040 ORTHO05D010982 3.4e-09 67.4 119 42.9
Prupe.2G189400 Prunus persica HOM05D000040 ORTHO05D000759 7.6e-09 66.2 110 43.6
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 9.9e-09 65.9 89 44.9
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 1.3e-08 65.5 62 54.8
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 2.2e-08 64.7 89 44.9
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 2.9e-08 64.3 89 44.9
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 2.9e-08 64.3 89 44.9
FAN06G4698 Fragaria x ananassa HOM05D011786 ORTHO05D011996 2.9e-08 64.3 34 94.1
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 3.8e-08 63.9 69 56.5
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 4.9e-08 63.5 61 54.1
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 4.9e-08 63.5 61 52.5
FAN17G2765 Fragaria x ananassa HOM05D016448 ORTHO05D000074 4.9e-08 63.5 73 52.1
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 6.4e-08 63.2 89 43.8
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 6.4e-08 63.2 99 42.4
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.1e-07 62.4 61 50.8
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.1e-07 62.4 61 52.5
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 1.4e-07 62.0 94 42.6
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 2.4e-07 61.2 69 46.4
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 2.4e-07 61.2 77 46.8
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 4.2e-07 60.5 55 54.5
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 4.2e-07 60.5 55 54.5
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 4.2e-07 60.5 55 54.5
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 5.5e-07 60.1 91 46.2
Manes.01G245800 Manihot esculenta HOM05D000040 ORTHO05D000759 5.5e-07 60.1 85 50.6
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 7.1e-07 59.7 83 45.8
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 7.1e-07 59.7 65 52.3
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 7.1e-07 59.7 61 50.8
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 9.3e-07 59.3 60 48.3
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.2e-06 58.9 79 40.5
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 1.2e-06 58.9 62 46.8
FAN12G1584 Fragaria x ananassa HOM05D016448 ORTHO05D199271 2.1e-06 58.2 35 82.9
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.1e-06 58.2 61 50.8
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 2.1e-06 58.2 57 52.6
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 2.7e-06 57.8 86 39.5
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 2.7e-06 57.8 72 48.6
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 3.5e-06 57.4 84 46.4
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.5e-06 57.4 91 44.0
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 4.6e-06 57.0 100 37.0
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 7.9e-06 56.2 81 44.4


User provided reference genes

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