Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2910.6 1481 100.0
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2756.1 1493 94.6
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2742.2 1491 94.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2736.4 1484 94.1
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 2724.9 1467 94.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2716.0 1493 93.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1604.0 1097 79.8
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1453.0 1505 56.5
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1447.6 1567 54.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1200.7 1529 48.5
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1189.9 1423 49.8
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1172.1 1522 47.8
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1091.6 1508 46.4
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 8.5e-301 1037.7 1513 43.8
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 1.9e-300 1036.6 1496 44.5
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 1.5e-297 1026.9 1504 44.4
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.1e-292 1010.7 1496 44.3
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 9.4e-284 981.1 1488 43.2
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 6.1e-283 978.4 1511 43.5
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 1.8e-279 966.8 1488 43.3
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 4.4e-273 945.7 1509 42.1
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 5.7e-265 918.7 1291 44.8
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 5.7e-265 918.7 1500 41.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.4e-263 914.1 1491 42.2
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.6e-262 910.6 1524 41.3
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 3.5e-262 909.4 1491 42.1
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.0e-261 906.4 1508 41.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 1.6e-259 900.6 1519 40.6
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 2.1e-259 900.2 1507 41.2
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.1e-250 871.3 1540 40.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 2.2e-248 863.6 1498 40.2
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.3e-245 854.4 1447 40.0
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.3e-245 854.4 1447 40.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 6.6e-245 852.0 1474 40.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.3e-244 849.4 1570 38.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 3.5e-238 829.7 1552 38.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.5e-236 823.5 1499 39.6
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.8e-235 820.1 1097 44.9
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.6e-230 802.7 1345 40.6
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.4e-223 781.2 1472 38.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.4e-223 780.4 1507 37.7
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 5.8e-217 759.2 1485 36.8
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.9e-216 756.1 1526 37.9
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 8.7e-213 745.3 1507 37.2
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 8.7e-213 745.3 972 44.2
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 5.8e-209 732.6 1470 37.3
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 6.5e-208 729.2 1856 32.9
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 4.2e-207 726.5 992 44.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 9.3e-207 725.3 1501 36.8
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 3.3e-204 716.8 1502 36.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 5.0e-200 703.0 971 43.0
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.8e-197 694.5 1521 35.3
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 3.3e-196 690.3 1526 35.4
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 4.3e-196 689.9 357 93.0
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 4.4e-188 663.3 1471 34.9
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.4e-186 658.3 1383 35.2
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 9.1e-186 655.6 1028 40.4
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 9.1e-186 655.6 1586 33.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.5e-184 649.4 1443 35.4
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.2e-182 645.2 1506 33.7
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.9e-181 640.2 1514 34.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.5e-180 638.3 1509 33.5
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.7e-179 633.6 1516 33.0
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.5e-177 626.7 960 41.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.9e-176 624.0 1478 34.2
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.3e-171 608.6 1553 33.9
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.5e-167 594.3 1467 33.9
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.2e-166 592.0 1618 31.3
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.3e-163 582.0 1486 33.5
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.7e-163 580.5 1507 32.6
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.8e-162 578.2 1481 33.4
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.4e-162 577.8 1452 33.5
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 4.1e-162 577.0 1522 33.2
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 2.9e-160 570.9 1484 33.2
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 8.6e-160 569.3 1508 31.8
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.5e-159 567.8 1369 34.0
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 3.3e-159 567.4 1469 32.6
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 2.1e-158 564.7 1479 32.7
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.2e-156 558.9 1481 32.6
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 2.0e-156 558.1 1475 31.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 3.4e-156 557.4 1465 32.3
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 7.5e-156 556.2 1009 36.4
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 4.9e-155 553.5 1366 33.7
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.8e-154 551.6 556 53.2
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.7e-152 545.0 1412 33.4
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 5.0e-152 543.5 624 47.0
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 4.3e-151 540.4 1436 32.6
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 6.1e-150 536.6 540 54.3
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.0e-148 531.6 1409 33.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.5e-145 520.8 1442 31.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.9e-144 517.3 1492 31.5
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.9e-122 445.3 490 49.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 6.6e-120 436.8 1599 28.1
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 2.1e-110 405.2 1005 31.8
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 1.9e-106 392.1 397 51.1
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.4e-101 375.9 972 30.3
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 8.4e-99 366.7 1221 30.7
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 1.8e-88 332.4 253 77.9
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.9e-88 331.3 155 100.0
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 5.3e-85 320.9 707 33.7
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.9e-85 320.5 517 38.3
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 5.5e-82 310.8 606 36.0
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.3e-80 305.4 851 33.7
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 9.7e-71 273.5 574 31.5
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.4e-69 269.6 695 36.7
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.6e-49 203.0 627 27.8
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.0e-47 196.1 772 28.9
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 6.3e-46 191.0 531 28.4
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.2e-41 176.8 390 33.8
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 2.6e-39 169.1 338 34.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 9.2e-37 160.6 422 35.1
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 4.5e-36 158.3 913 23.8
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.0e-35 157.1 431 32.7
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 9.8e-31 140.6 515 30.7
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 3.2e-29 135.6 273 31.1
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 6.6e-27 127.9 127 48.8
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.6e-19 101.3 514 28.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.9e-18 99.8 155 31.0
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 5.6e-18 98.2 378 33.1
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.9e-13 83.2 296 29.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 6.6e-11 74.7 59 64.4
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 4.3e-10 72.0 49 57.1
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.6e-10 71.6 312 29.5
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.2e-07 63.9 93 47.3
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.6e-07 62.8 149 31.5


User provided reference genes

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