Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0900 Fragaria x ananassa HOM05D000398 ORTHO05D007380 1.7e-75 285.8 137 100.0
FAN10G2655 Fragaria x ananassa HOM05D000398 ORTHO05D007380 3.3e-66 255.0 191 70.2
FAN01G0954 Fragaria x ananassa HOM05D000398 ORTHO05D007380 2.5e-53 212.2 193 61.1
FAN06G0237 Fragaria x ananassa HOM05D000398 ORTHO05D007380 2.1e-52 209.1 193 60.6
FAN06G1092 Fragaria x ananassa HOM05D000398 ORTHO05D007380 2.1e-52 209.1 193 60.6
FAN03G0067 Fragaria x ananassa HOM05D000398 ORTHO05D007380 7.9e-52 207.2 192 60.4
FvH4_7g09870 Fragaria vesca HOM05D000398 ORTHO05D007380 3.1e-40 168.7 97 82.5
RcHm_v2.0_Chr1g0347411 Rosa chinensis HOM05D000398 ORTHO05D007380 1.1e-37 160.2 94 79.8
Prupe.2G127800 Prunus persica HOM05D000398 ORTHO05D007380 3.9e-35 151.8 151 55.0
Haze_02815 Corylus avellana HOM05D000398 ORTHO05D007380 2.8e-33 145.6 95 69.5
CiPaw.14G021400 Carya illinoinensis HOM05D000398 ORTHO05D007380 6.3e-33 144.4 152 50.7
Thecc.01G392900 Theobroma cacao HOM05D000398 ORTHO05D007380 6.3e-33 144.4 98 66.3
COL.COLO4_12425 Corchorus olitorius HOM05D000398 ORTHO05D007380 8.2e-33 144.1 98 64.3
Lj1g0000126 Lotus japonicus HOM05D000398 ORTHO05D007380 1.4e-32 143.3 113 59.3
Lj1g0014152 Lotus japonicus HOM05D000398 ORTHO05D007380 1.4e-32 143.3 155 50.3
Cfa011086 Carpinus fangiana HOM05D000398 ORTHO05D007380 1.8e-32 142.9 95 68.4
Duzib268G1193 Durio zibethinus HOM05D000398 ORTHO05D007380 1.8e-32 142.9 80 76.2
Sabra02G0106000 Salix brachista HOM05D000398 ORTHO05D007380 1.8e-32 142.9 98 67.3
Potri.002G137000 Populus trichocarpa HOM05D000398 ORTHO05D007380 2.4e-32 142.5 98 67.3
MD07G1104100 Malus domestica HOM05D000398 ORTHO05D007380 4.1e-32 141.7 95 68.4
Gohir.D08G159300 Gossypium hirsutum HOM05D000398 ORTHO05D007380 9.1e-32 140.6 95 64.2
TWI59G1458 Tripterygium wilfordii HOM05D000398 ORTHO05D007380 9.1e-32 140.6 95 70.5
Gorai.004G165500 Gossypium raimondii HOM05D000398 ORTHO05D007380 1.2e-31 140.2 93 65.6
GSVIVG01018251001 Vitis vinifera HOM05D000398 ORTHO05D007380 4.5e-31 138.3 97 68.0
arahy.Tifrunner.gnm1.ann1.LPB8X1 Arachis hypogaea HOM05D000398 ORTHO05D007380 5.9e-31 137.9 154 46.1
arahy.Tifrunner.gnm1.ann1.X2UHZI Arachis hypogaea HOM05D000398 ORTHO05D007380 5.9e-31 137.9 154 46.1
Ca_04034_v3 Cicer arietinum L. HOM05D000398 ORTHO05D007380 5.9e-31 137.9 82 72.0
Actinidia33499 Actinidia chinensis HOM05D000398 ORTHO05D007380 7.7e-31 137.5 158 50.0
Glyma.09G242000 Glycine max HOM05D000398 ORTHO05D007380 7.7e-31 137.5 187 42.8
Medtr7g007850 Medicago truncatula HOM05D000398 ORTHO05D007380 7.7e-31 137.5 109 59.6
CSS0036742 Camellia sinensis var. sinensis HOM05D000398 ORTHO05D007380 1.0e-30 137.1 99 62.6
Duzib138G1527 Durio zibethinus HOM05D000398 ORTHO05D007380 1.0e-30 137.1 98 64.3
Lj1g0001539 Lotus japonicus HOM05D000398 ORTHO05D007380 3.8e-30 135.2 153 46.4
TPR.G12285 Trifolium pratense HOM05D000398 ORTHO05D007380 5.0e-30 134.8 97 69.1
vmacro21049 Vaccinium macrocarpon HOM05D000398 ORTHO05D007380 6.5e-30 134.4 103 58.3
Cc02_g24960 Coffea canephora HOM05D000398 ORTHO05D007380 1.9e-29 132.9 99 63.6
Migut.N01751 Erythranthe guttata HOM05D000398 ORTHO05D007380 2.5e-29 132.5 99 59.6
Eucgr.D01516 Eucalyptus grandis HOM05D000398 ORTHO05D007380 3.2e-29 132.1 94 66.0
PGR004G0219 Punica granatum HOM05D000398 ORTHO05D007380 3.2e-29 132.1 94 68.1
Lalb_Chr19g0126591 Lupinus albus HOM05D000398 ORTHO05D007380 4.2e-29 131.7 152 47.4
Psat3g195640 Pisum sativum HOM05D000398 ORTHO05D007380 5.5e-29 131.3 75 77.3
Glyma.18G253600 Glycine max HOM05D000398 ORTHO05D007380 9.4e-29 130.6 187 41.7
Oeu013854.1 Olea europaea HOM05D000398 ORTHO05D007380 9.4e-29 130.6 131 54.2
TAR629G0639 Trochodendron aralioides HOM05D000398 ORTHO05D007380 9.4e-29 130.6 157 46.5
Sc02g0003000 Simmondsia chinensis HOM05D000398 ORTHO05D007380 2.1e-28 129.4 153 46.4
Nitab4.5_0010261g0050 Nicotiana tabacum HOM05D000398 ORTHO05D007380 3.6e-28 128.6 79 72.2
AUR62023422 Chenopodium quinoa HOM05D000398 ORTHO05D007380 4.7e-28 128.3 99 60.6
SGA_v2.0_scaffold116G32297 Striga asiatica HOM05D000398 ORTHO05D007380 6.1e-28 127.9 131 51.1
AUR62013731 Chenopodium quinoa HOM05D000398 ORTHO05D007380 8.0e-28 127.5 129 49.6
Nitab4.5_0000210g0010 Nicotiana tabacum HOM05D000398 ORTHO05D007380 8.0e-28 127.5 102 59.8
Aqoxy7G00841 Aquilegia oxysepala HOM05D000398 ORTHO05D007380 1.0e-27 127.1 191 40.8
MSTRG.4925 Avicennia marina HOM05D000398 ORTHO05D007380 2.3e-27 125.9 104 59.6
Peaxi162Scf00001g00606 Petunia axillaris HOM05D000398 ORTHO05D007380 2.3e-27 125.9 77 72.7
SalBow5G3242 Salvia bowleyana HOM05D000398 ORTHO05D007380 2.3e-27 125.9 156 44.2
SalBow5G3392 Salvia bowleyana HOM05D000398 ORTHO05D007380 2.3e-27 125.9 156 44.2
Hma1.2p1_0041F.1_g025290 Hydrangea macrophylla HOM05D000398 ORTHO05D007380 3.0e-27 125.6 79 74.7
Phvul.008G045400 Phaseolus vulgaris HOM05D000398 ORTHO05D007380 3.0e-27 125.6 91 62.6
Hund17079 Selenicereus undatus HOM05D000398 ORTHO05D007380 3.0e-27 125.6 129 50.4
Ah.05g173210 Amaranthus hybridus HOM05D000398 ORTHO05D007380 3.9e-27 125.2 75 70.7
EL10Ac1g00778 Beta vulgaris HOM05D000398 ORTHO05D007380 5.2e-27 124.8 99 57.6
CAN.G402.7 Capsicum annuum HOM05D000398 ORTHO05D007380 5.2e-27 124.8 100 60.0
QL04p030906 Quercus lobata HOM05D000398 ORTHO05D007380 1.1e-26 123.6 93 63.4
ATR0057G056 Amborella trichopoda HOM05D000398 ORTHO05D007380 1.5e-26 123.2 97 59.8
HanXRQChr03g0093201 Helianthus annuus HOM05D000398 ORTHO05D007380 1.5e-26 123.2 102 55.9
Lj7C544G9 Lonicera japonica HOM05D000398 ORTHO05D007380 2.0e-26 122.9 178 42.7
ECA240G3974 Erigeron canadensis HOM05D000398 ORTHO05D007380 4.4e-26 121.7 102 53.9
HanXRQChr04g0119691 Helianthus annuus HOM05D000398 ORTHO05D007380 5.7e-26 121.3 98 56.1
MBI04_g36326_MAGBIO Magnolia biondii HOM05D000398 ORTHO05D007380 7.4e-26 120.9 96 60.4
Ciclev10019465m.g Citrus clementina HOM05D000398 ORTHO05D007380 1.3e-25 120.2 97 58.8
VMungo1383G2578 Vigna mungo HOM05D000398 ORTHO05D007380 1.3e-25 120.2 151 43.7
Zm00001eb249380 Zea mays HOM05D000398 ORTHO05D007380 1.3e-25 120.2 123 53.7
Sopen10g008350 Solanum pennellii HOM05D000398 ORTHO05D007380 2.2e-25 119.4 95 56.8
Cpa.g.sc101.25 Carica papaya HOM05D000398 ORTHO05D007380 6.3e-25 117.9 91 62.6
Solyc10g018600.2 Solanum lycopersicum HOM05D000398 ORTHO05D007380 6.3e-25 117.9 95 56.8
Lsat_1_v5_gn_3_131260 Lactuca sativa HOM05D000398 ORTHO05D007380 8.2e-25 117.5 102 54.9
THA.LOC104814069 Tarenaya hassleriana HOM05D000398 ORTHO05D007380 8.2e-25 117.5 102 53.9
MBI15_g33466_MAGBIO Magnolia biondii HOM05D002188 ORTHO05D007380 1.1e-24 117.1 102 53.9
Nn1g00883 Nelumbo nucifera HOM05D000398 ORTHO05D007380 1.1e-24 117.1 72 72.2
DCAR_025071 Daucus carota HOM05D000398 ORTHO05D007380 2.4e-24 115.9 95 57.9
AL6G53510 Arabidopsis lyrata HOM05D000398 ORTHO05D007380 4.1e-24 115.2 102 55.9
PSO675G9072 Papaver somniferum HOM05D000398 ORTHO05D007380 4.1e-24 115.2 96 55.2
PSO732G0452 Papaver somniferum HOM05D000398 ORTHO05D007380 4.1e-24 115.2 96 54.2
Actinidia12650 Actinidia chinensis HOM05D000398 ORTHO05D007380 7.0e-24 114.4 61 80.3
Aa31LG5G60 Aethionema arabicum HOM05D000398 ORTHO05D007380 9.1e-24 114.0 102 55.9
ClCG06G002560 Citrullus lanatus HOM05D000398 ORTHO05D007380 1.6e-23 113.2 97 58.8
ECA236G0868 Erigeron canadensis HOM05D000398 ORTHO05D007380 1.6e-23 113.2 94 56.4
AT1G05940 Arabidopsis thaliana HOM05D000398 ORTHO05D007380 2.0e-23 112.8 103 55.3
Sed0005777 Sechium edule HOM05D000398 ORTHO05D007380 2.0e-23 112.8 98 56.1
SpUn1258_0010 Schrenkiella parvula HOM05D000398 ORTHO05D007380 3.5e-23 112.1 100 54.0
Aqoxy7G00840 Aquilegia oxysepala HOM05D000398 ORTHO05D007380 5.9e-23 111.3 137 46.0
C09p00030 Brassica napus HOM05D000398 ORTHO05D007380 5.9e-23 111.3 100 54.0
BolC9t52938H Brassica oleracea HOM05D000398 ORTHO05D007380 5.9e-23 111.3 100 54.0
BraA09t35677Z Brassica rapa HOM05D000398 ORTHO05D007380 5.9e-23 111.3 100 54.0
Migut.B01548 Erythranthe guttata HOM05D000398 ORTHO05D007380 2.9e-22 109.0 74 66.2
Os02g0655700 Oryza sativa ssp. japonica HOM05D000398 ORTHO05D007380 2.9e-22 109.0 79 62.0
SalBow5G1348 Salvia bowleyana HOM05D000398 ORTHO05D007380 2.9e-22 109.0 63 73.0
MSTRG.17136 Avicennia marina HOM05D000398 ORTHO05D007380 3.8e-22 108.6 95 56.8
HPP92_020924 Vanilla planifolia HOM05D000398 ORTHO05D007380 3.8e-22 108.6 107 51.4
Carub.0006s3722 Capsella rubella HOM05D000398 ORTHO05D007380 6.5e-22 107.8 100 52.0
CsaV3_6G008570 Cucumis sativus L. HOM05D000398 ORTHO05D007380 8.5e-22 107.5 91 56.0
SGA_v2.0_scaffold153G36914 Striga asiatica HOM05D000398 ORTHO05D007380 2.5e-21 105.9 116 47.4
ATR0057G036 Amborella trichopoda HOM05D000398 ORTHO05D007380 4.2e-21 105.1 82 56.1
Lsat_1_v5_gn_7_35701 Lactuca sativa HOM05D000398 ORTHO05D007380 4.2e-21 105.1 98 48.0
THA.LOC104816466 Tarenaya hassleriana HOM05D000398 ORTHO05D007380 7.2e-21 104.4 171 39.8
ATR0057G132 Amborella trichopoda HOM05D000398 ORTHO05D007380 1.6e-20 103.2 81 58.0
SEGI_28511 Sequoiadendron giganteum HOM05D000398 ORTHO05D007380 3.0e-19 99.0 79 60.8
CDE02G2885 Ceratophyllum demersum HOM05D000398 ORTHO05D007380 2.2e-17 92.8 78 51.3
Pp3c14_100 Physcomitrium patens HOM05D000398 ORTHO05D007380 4.8e-17 91.7 135 40.0
Gohir.A08G138100 Gossypium hirsutum HOM05D000398 ORTHO05D007380 2.7e-15 85.9 66 53.0
Mapoly0071s0097 Marchantia polymorpha HOM05D000398 ORTHO05D007380 1.0e-11 73.9 82 45.1
SMO340G0037 Selaginella moellendorffii HOM05D000398 ORTHO05D007380 2.6e-10 69.3 73 50.7
SMO164G0076 Selaginella moellendorffii HOM05D000398 ORTHO05D002677 8.3e-09 64.3 89 36.0
CBR_g23144 Chara braunii HOM05D000398 ORTHO05D007380 4.1e-08 62.0 77 40.3
C09p17340 Brassica napus HOM05D000398 ORTHO05D002677 1.2e-07 60.5 107 33.6
BolC9t54636H Brassica oleracea HOM05D000398 ORTHO05D002677 1.2e-07 60.5 107 33.6
BcaC04g22608 Brassica carinata HOM05D000398 ORTHO05D002677 1.6e-07 60.1 107 33.6
CARHR054140 Cardamine hirsuta HOM05D000398 ORTHO05D002677 2.0e-07 59.7 80 36.2
Thhalv10023348m.g Eutrema salsugineum HOM05D000398 ORTHO05D002677 2.0e-07 59.7 80 37.5
BcaC04g22589 Brassica carinata HOM05D000398 ORTHO05D002677 4.5e-07 58.5 104 33.7
BolC9t54655H Brassica oleracea HOM05D000398 ORTHO05D002677 4.5e-07 58.5 104 33.7
Sp2g00120 Schrenkiella parvula HOM05D000398 ORTHO05D002677 4.5e-07 58.5 80 37.5
BraA09t37090Z Brassica rapa HOM05D000398 ORTHO05D002677 7.7e-07 57.8 104 33.7
BcaB07g31479 Brassica carinata HOM05D000398 ORTHO05D002677 1.0e-06 57.4 77 37.7
A09p14530 Brassica napus HOM05D000398 ORTHO05D002677 1.0e-06 57.4 77 37.7
BraA09t37101Z Brassica rapa HOM05D000398 ORTHO05D002677 1.0e-06 57.4 77 37.7
Carub.0002s0659 Capsella rubella HOM05D000398 ORTHO05D002677 1.0e-06 57.4 77 37.7
BcaB07g31494 Brassica carinata HOM05D000398 ORTHO05D002677 1.3e-06 57.0 104 33.7
Aqoxy1G00519 Aquilegia oxysepala HOM05D000398 ORTHO05D002677 1.7e-06 56.6 79 30.4
Sed0015378 Sechium edule HOM05D000398 ORTHO05D002677 1.7e-06 56.6 96 32.3
C09p17630 Brassica napus HOM05D000398 ORTHO05D002677 2.3e-06 56.2 75 37.3
MD14G1007600 Malus domestica HOM05D000398 ORTHO05D002677 2.3e-06 56.2 79 31.6
PSO339G2824 Papaver somniferum HOM05D000398 ORTHO05D002677 2.3e-06 56.2 97 27.8
SMO302G0031 Selaginella moellendorffii HOM05D000398 ORTHO05D014397 2.3e-06 56.2 56 44.6
Dinv25047 Davidia involucrata HOM05D000398 ORTHO05D002677 2.9e-06 55.8 98 30.6
A09p14420 Brassica napus HOM05D000398 ORTHO05D002677 3.8e-06 55.5 104 32.7
ECA233G3876 Erigeron canadensis HOM05D000398 ORTHO05D002677 3.8e-06 55.5 80 33.8
Prupe.7G012500 Prunus persica HOM05D000398 ORTHO05D002677 3.8e-06 55.5 96 32.3
Zm00001eb218400 Zea mays HOM05D000398 ORTHO05D002677 3.8e-06 55.5 62 38.7
MD12G1010500 Malus domestica HOM05D000398 ORTHO05D002677 5.0e-06 55.1 79 31.6
Medtr7g086510 Medicago truncatula HOM05D000398 ORTHO05D002677 5.0e-06 55.1 80 33.8
RcHm_v2.0_Chr3g0496211 Rosa chinensis HOM05D000398 ORTHO05D002677 5.0e-06 55.1 79 32.9
Sabra19G0050100 Salix brachista HOM05D000398 ORTHO05D002677 5.0e-06 55.1 79 29.1
VMungo1383G1567 Vigna mungo HOM05D000398 ORTHO05D002677 5.0e-06 55.1 80 36.2
Sopen10g031960 Solanum pennellii HOM05D000398 ORTHO05D002677 6.6e-06 54.7 89 31.5
AT1G58030 Arabidopsis thaliana HOM05D000398 ORTHO05D002677 8.6e-06 54.3 77 35.1
Solyc10g081460.2 Solanum lycopersicum HOM05D000398 ORTHO05D002677 8.6e-06 54.3 89 30.3


User provided reference genes

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