Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0888 Fragaria x ananassa HOM05D011407 ORTHO05D014639 2.0e-78 295.8 159 100.0
FAN03G2799 Fragaria x ananassa HOM05D011407 ORTHO05D014639 1.7e-69 266.2 165 87.9
FvH4_7g12870 Fragaria vesca HOM05D011407 ORTHO05D014639 2.2e-61 239.2 127 87.4
FAN06G0802 Fragaria x ananassa HOM05D011407 ORTHO05D014639 2.2e-61 239.2 127 87.4
FAN01G0146 Fragaria x ananassa HOM05D011407 ORTHO05D014639 1.5e-54 216.5 133 93.2
FAN10G1857 Fragaria x ananassa HOM05D011407 ORTHO05D014639 1.5e-46 189.9 138 69.6
FAN10G3018 Fragaria x ananassa HOM05D011407 ORTHO05D014639 1.5e-46 189.9 138 69.6
FvH4_7g12880 Fragaria vesca HOM05D011407 ORTHO05D014639 4.4e-46 188.3 137 70.1
FAN06G1639 Fragaria x ananassa HOM05D011407 ORTHO05D014639 3.7e-45 185.3 137 68.6
FAN06G0239 Fragaria x ananassa HOM05D011407 ORTHO05D014639 1.1e-44 183.7 138 68.1
FAN06G3076 Fragaria x ananassa HOM05D011407 ORTHO05D014639 2.5e-41 172.6 109 78.0
FAN10G0327 Fragaria x ananassa HOM05D011407 ORTHO05D014639 5.6e-41 171.4 83 97.6
RcHm_v2.0_Chr4g0439191 Rosa chinensis HOM05D011407 ORTHO05D014639 2.1e-40 169.5 139 59.7
RcHm_v2.0_Chr2g0089651 Rosa chinensis HOM05D011407 ORTHO05D000088 1.7e-37 159.8 139 59.0
RcHm_v2.0_Chr1g0351951 Rosa chinensis HOM05D011407 ORTHO05D000088 2.1e-35 152.9 138 57.2
FAN01G2343 Fragaria x ananassa HOM05D011407 ORTHO05D014639 2.8e-32 142.5 148 53.4
FAN26G3456 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.4e-15 86.3 134 36.6
FvH4_1g23530 Fragaria vesca HOM05D000823 ORTHO05D000088 3.1e-15 85.9 128 36.7
FAN19G1451 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.1e-15 85.9 128 36.7
RcHm_v2.0_Chr2g0103411 Rosa chinensis HOM05D000395 ORTHO05D000088 6.9e-15 84.7 121 35.5
Prupe.7G144200 Prunus persica HOM05D000395 ORTHO05D000088 3.4e-14 82.4 127 35.4
RcHm_v2.0_Chr2g0118951 Rosa chinensis HOM05D000395 ORTHO05D000088 6.4e-13 78.2 107 39.3
FvH4_7g04060 Fragaria vesca HOM05D000395 ORTHO05D000088 1.4e-12 77.0 132 32.6
FAN06G4820 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.4e-12 77.0 132 32.6
FvH4_1g14620 Fragaria vesca HOM05D000395 ORTHO05D000088 2.4e-12 76.3 110 34.5
FAN19G0713 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.4e-12 76.3 110 34.5
FAN08G3323 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.4e-12 75.1 99 37.4
FAN13G0933 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.4e-12 75.1 98 36.7
FAN03G1401 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.1e-12 74.7 132 31.8
FvH4_5g19930 Fragaria vesca HOM05D000823 ORTHO05D000088 9.3e-12 74.3 115 34.8
RcHm_v2.0_Chr1g0350161 Rosa chinensis HOM05D000395 ORTHO05D000088 1.6e-11 73.6 138 35.5
FAN04G0695 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.1e-11 73.2 100 37.0
RcHm_v2.0_Chr2g0103391 Rosa chinensis HOM05D000395 ORTHO05D000088 2.7e-11 72.8 103 35.9
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 3.5e-11 72.4 99 36.4
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 6.0e-11 71.6 115 34.8
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 6.0e-11 71.6 96 34.4
RhsimUnG0104500 Rhododendron simsii HOM05D000395 ORTHO05D000088 6.0e-11 71.6 123 34.1
Ah.06g189670 Amaranthus hybridus HOM05D000823 ORTHO05D000088 7.9e-11 71.2 134 29.9
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 7.9e-11 71.2 102 36.3
RcHm_v2.0_Chr2g0103401 Rosa chinensis HOM05D000395 ORTHO05D000088 1.3e-10 70.5 96 36.5
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.3e-10 69.7 95 35.8
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 3.0e-10 69.3 105 34.3
TWI38G0162 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 3.0e-10 69.3 108 30.6
vmacro04665 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 3.0e-10 69.3 120 30.8
vmacro17896 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 3.0e-10 69.3 84 34.5
FvH4_2g13150 Fragaria vesca HOM05D000011 ORTHO05D000157 3.9e-10 68.9 91 37.4
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 3.9e-10 68.9 87 40.2
Lsat_1_v5_gn_4_177680 Lactuca sativa HOM05D000823 ORTHO05D000088 5.1e-10 68.6 97 36.1
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 5.1e-10 68.6 105 34.3
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.7e-10 67.8 100 35.0
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 1.5e-09 67.0 90 35.6
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 1.9e-09 66.6 104 33.7
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 3.3e-09 65.9 84 33.3
PSO384G0362 Papaver somniferum HOM05D000823 ORTHO05D000088 3.3e-09 65.9 97 33.0
AUR62005183 Chenopodium quinoa HOM05D000823 ORTHO05D000088 4.3e-09 65.5 79 36.7
PSO339G4233 Papaver somniferum HOM05D000823 ORTHO05D000088 4.3e-09 65.5 97 33.0
TWI56G0922 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 4.3e-09 65.5 104 35.6
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 5.6e-09 65.1 85 35.3
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 7.3e-09 64.7 104 32.7
Ah.06g189660 Amaranthus hybridus HOM05D000823 ORTHO05D000088 9.6e-09 64.3 106 32.1
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 9.6e-09 64.3 123 29.3
vmacro16013 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 9.6e-09 64.3 92 32.6
vmacro17894 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 9.6e-09 64.3 68 36.8
Aqoxy6G00929 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.3e-08 63.9 100 34.0
Cpa.g.sc7.145 Carica papaya HOM05D000823 ORTHO05D000088 1.6e-08 63.5 105 36.2
SalBow8G3609 Salvia bowleyana HOM05D000823 ORTHO05D000088 1.6e-08 63.5 109 32.1
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 1.6e-08 63.5 122 33.6
PSO832G4270 Papaver somniferum HOM05D000395 ORTHO05D000088 2.1e-08 63.2 102 34.3
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 3.6e-08 62.4 101 32.7
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 3.6e-08 62.4 101 31.7
GSVIVG01023108001 Vitis vinifera HOM05D007130 ORTHO05D002078 4.8e-08 62.0 85 35.3
ATR0665G295 Amborella trichopoda HOM05D000823 ORTHO05D000088 6.2e-08 61.6 84 34.5
Nn5g28071 Nelumbo nucifera HOM05D000823 ORTHO05D000088 6.2e-08 61.6 110 31.8
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 6.2e-08 61.6 106 30.2
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 8.1e-08 61.2 108 29.6
Thhalv10028696m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 8.1e-08 61.2 122 33.6
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 8.1e-08 61.2 81 34.6
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.1e-08 61.2 112 29.5
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.1e-07 60.8 102 30.4
ECA232G4654 Erigeron canadensis HOM05D000823 ORTHO05D016096 1.4e-07 60.5 67 38.8
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.8e-07 60.1 82 35.4
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 1.8e-07 60.1 59 44.1
Carub.0006s1299 Capsella rubella HOM05D006628 ORTHO05D000088 2.4e-07 59.7 103 31.1
Lsat_1_v5_gn_3_94221 Lactuca sativa HOM05D000823 ORTHO05D000088 2.4e-07 59.7 104 33.7
Prupe.7G144100 Prunus persica HOM05D000395 ORTHO05D000088 2.4e-07 59.7 66 37.9
Aqoxy6G00928 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 3.1e-07 59.3 80 36.2
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 3.1e-07 59.3 120 31.7
PSO063G6644 Papaver somniferum HOM05D000395 ORTHO05D000088 3.1e-07 59.3 89 33.7
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 4.0e-07 58.9 70 38.6
FAN01G3034 Fragaria x ananassa HOM05D000888 ORTHO05D000740 4.0e-07 58.9 102 32.4
Hund08735 Selenicereus undatus HOM05D000823 ORTHO05D000088 4.0e-07 58.9 91 31.9
CSS0019656 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 5.3e-07 58.5 101 32.7
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 6.9e-07 58.2 86 31.4
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 6.9e-07 58.2 113 36.3
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 6.9e-07 58.2 85 29.4
RcHm_v2.0_Chr7g0224941 Rosa chinensis HOM05D000823 ORTHO05D000088 6.9e-07 58.2 79 36.7
AUR62027222 Chenopodium quinoa HOM05D000823 ORTHO05D000088 9.0e-07 57.8 116 26.7
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 9.0e-07 57.8 102 29.4
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 9.0e-07 57.8 82 32.9
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 9.0e-07 57.8 82 34.1
Aqoxy6G00931 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.2e-06 57.4 99 33.3
FvH4_2g07240 Fragaria vesca HOM05D000823 ORTHO05D009132 1.2e-06 57.4 102 31.4
FAN24G1365 Fragaria x ananassa HOM05D000823 ORTHO05D009132 1.2e-06 57.4 102 31.4
Nn5g29405 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.2e-06 57.4 113 28.3
PSO675G0619 Papaver somniferum HOM05D000395 ORTHO05D019683 1.2e-06 57.4 82 34.1
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 1.5e-06 57.0 88 34.1
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 1.5e-06 57.0 87 28.7
vmacro21190 Vaccinium macrocarpon HOM05D005797 ORTHO05D006479 1.5e-06 57.0 78 34.6
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 2.0e-06 56.6 114 28.1
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 2.0e-06 56.6 122 34.4
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 2.0e-06 56.6 112 31.2
FvH4_7g12260 Fragaria vesca HOM05D000888 ORTHO05D000740 2.0e-06 56.6 102 31.4
FAN10G0782 Fragaria x ananassa HOM05D000888 ORTHO05D000740 2.0e-06 56.6 102 31.4
FAN10G2447 Fragaria x ananassa HOM05D000888 ORTHO05D000740 2.0e-06 56.6 102 31.4
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 2.0e-06 56.6 95 27.4
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 2.0e-06 56.6 91 29.7
AT3G06160 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 2.6e-06 56.2 111 29.7
Ah.09g231430 Amaranthus hybridus HOM05D017700 ORTHO05D000088 3.4e-06 55.8 100 33.0
ATR0796G296 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.4e-06 55.8 120 34.2
Aqoxy5G01409 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 3.4e-06 55.8 87 34.5
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 3.4e-06 55.8 95 28.4
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 3.4e-06 55.8 87 28.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.4e-06 55.8 96 27.1
AT1G16640 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 4.5e-06 55.5 110 34.5
FAN27G1325 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.5e-06 55.5 56 39.3
Oeu013043.1 Olea europaea HOM05D000823 ORTHO05D000088 4.5e-06 55.5 58 41.4
PSO675G8304 Papaver somniferum HOM05D000395 ORTHO05D000088 4.5e-06 55.5 85 31.8
Dinv38477 Davidia involucrata HOM05D005797 ORTHO05D006479 5.8e-06 55.1 112 28.6
FvH4_2g40960 Fragaria vesca HOM05D000823 ORTHO05D000088 5.8e-06 55.1 101 33.7
TPR.G25520 Trifolium pratense HOM05D000395 ORTHO05D000088 5.8e-06 55.1 88 31.8
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 7.6e-06 54.7 126 31.7
FvH4_2g07300 Fragaria vesca HOM05D000823 ORTHO05D000088 7.6e-06 54.7 56 39.3
FAN20G0318 Fragaria x ananassa HOM05D000823 ORTHO05D000088 7.6e-06 54.7 93 35.5
FAN24G0466 Fragaria x ananassa HOM05D000823 ORTHO05D000088 7.6e-06 54.7 56 39.3
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 7.6e-06 54.7 95 27.4
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 7.6e-06 54.7 93 29.0
FvH4_2g06960 Fragaria vesca HOM05D000823 ORTHO05D000088 9.9e-06 54.3 70 35.7


User provided reference genes

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