Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-83 313.2 162 100.0
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-79 300.1 162 96.9
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-63 246.1 129 99.2
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-63 245.0 129 98.4
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.9e-63 244.2 129 98.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 2.2e-61 239.2 129 97.7
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-60 236.1 129 96.1
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 8.7e-50 200.7 130 83.1
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-47 193.0 101 99.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-47 193.0 105 96.2
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 3.8e-45 185.3 131 77.1
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 3.8e-29 132.1 152 53.9
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.9e-21 105.9 149 47.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 4.2e-20 102.1 137 46.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 5.5e-20 101.7 143 46.9
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 7.2e-20 101.3 138 48.6
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.4e-20 100.9 54 94.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-19 100.5 114 53.5
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.1e-19 99.8 88 56.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.7e-19 99.4 130 48.5
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.7e-19 98.6 117 49.6
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.8e-18 96.7 177 39.0
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 4.0e-18 95.5 138 44.9
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.0e-18 95.5 104 51.0
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 8.8e-18 94.4 104 51.0
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.2e-16 89.7 129 45.0
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.2e-16 89.7 189 37.0
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 4.8e-16 88.6 121 46.3
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 8.3e-16 87.8 81 49.4
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 8.3e-16 87.8 117 47.9
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-15 87.0 142 43.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 4.1e-15 85.5 118 47.5
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 5.4e-15 85.1 119 42.0
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 5.4e-15 85.1 130 43.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 9.1e-15 84.3 144 39.6
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 9.1e-15 84.3 98 49.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 9.1e-15 84.3 117 47.0
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.2e-14 84.0 86 52.3
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 3.5e-14 82.4 108 48.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 4.5e-14 82.0 159 37.7
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.9e-14 81.6 112 48.2
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 5.9e-14 81.6 81 48.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.3e-13 80.5 86 47.7
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.3e-13 80.5 102 45.1
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.3e-13 80.5 74 48.6
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.3e-13 80.5 105 42.9
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.2e-13 79.7 106 43.4
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.2e-13 79.7 87 44.8
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.9e-13 79.3 121 44.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.8e-13 79.0 149 40.9
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 3.8e-13 79.0 76 53.9
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 5.0e-13 78.6 118 40.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 5.0e-13 78.6 69 55.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 6.5e-13 78.2 96 44.8
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 6.5e-13 78.2 103 40.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.1e-12 77.4 109 44.0
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.1e-12 77.4 109 45.9
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.1e-12 77.4 115 37.4
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.5e-12 77.0 156 35.3
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.5e-12 77.0 119 39.5
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.5e-12 76.3 82 43.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.5e-12 76.3 89 47.2
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.5e-12 76.3 105 44.8
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 3.2e-12 75.9 77 45.5
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.2e-12 75.9 107 42.1
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.2e-12 75.9 121 43.8
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 7.2e-12 74.7 69 49.3
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 9.5e-12 74.3 82 42.7
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.5e-12 74.3 135 35.6
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 9.5e-12 74.3 118 39.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 9.5e-12 74.3 111 45.0
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-11 73.9 152 38.8
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.2e-11 73.9 152 38.8
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.2e-11 73.9 101 42.6
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-11 73.9 85 50.6
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.6e-11 73.6 91 45.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.1e-11 73.2 106 39.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 2.7e-11 72.8 77 49.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.7e-11 72.8 94 40.4
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 4.7e-11 72.0 126 40.5
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 4.7e-11 72.0 160 35.6
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 6.1e-11 71.6 120 35.8
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.4e-10 70.5 91 45.1
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.4e-10 70.5 181 33.1
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.8e-10 70.1 110 43.6
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 2.3e-10 69.7 133 36.1
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.3e-10 69.7 97 46.4
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 2.3e-10 69.7 93 43.0
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 3.0e-10 69.3 89 40.4
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 4.0e-10 68.9 131 38.2
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 5.2e-10 68.6 112 42.9
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 5.2e-10 68.6 122 35.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 5.2e-10 68.6 68 45.6
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.8e-10 68.2 99 48.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 8.8e-10 67.8 126 36.5
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 8.8e-10 67.8 126 36.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 8.8e-10 67.8 101 38.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.8e-10 67.8 155 36.8
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.2e-09 67.4 130 36.9
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.5e-09 67.0 133 36.8
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.0e-09 66.6 102 38.2
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.0e-09 66.6 114 36.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 3.4e-09 65.9 122 34.4
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 3.4e-09 65.9 82 39.0
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 4.4e-09 65.5 80 47.5
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 5.7e-09 65.1 126 34.9
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 7.5e-09 64.7 100 41.0
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 7.5e-09 64.7 142 35.2
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.7e-08 63.5 109 43.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.7e-08 63.5 97 40.2
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.2e-08 63.2 74 43.2
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 2.2e-08 63.2 101 38.6
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.8e-08 62.8 91 44.0
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 2.8e-08 62.8 87 42.5
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.7e-08 62.4 120 33.3
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 6.3e-08 61.6 127 40.2
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 6.3e-08 61.6 84 47.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.1e-07 60.8 59 47.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.4e-07 60.5 93 38.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.4e-07 60.5 132 32.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.4e-07 59.7 112 33.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.1e-07 58.9 56 48.2
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 4.5e-06 55.5 178 29.2


User provided reference genes

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