Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.7e-45 185.7 96 100.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-39 166.4 94 93.6
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.1e-31 137.9 104 76.0
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.3e-28 128.3 67 97.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 8.0e-27 123.6 107 68.2
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.8e-26 122.5 107 68.2
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.3e-26 122.1 106 68.9
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.4e-23 112.8 105 60.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.4e-23 112.1 106 62.3
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 9.2e-23 110.2 105 61.0
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.0e-21 105.1 105 59.0
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.0e-21 105.1 105 59.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.0e-21 105.1 96 62.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.9e-21 104.8 106 59.4
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.5e-20 102.1 106 56.6
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 3.3e-20 101.7 107 55.1
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.8e-19 98.6 103 58.3
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.8e-19 98.6 97 57.7
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.2e-19 97.4 106 54.7
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 8.1e-19 97.1 105 57.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.1e-18 96.7 107 53.3
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.8e-18 95.9 107 54.2
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.3e-18 95.5 102 52.0
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.1e-18 95.1 106 51.9
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 4.0e-18 94.7 106 50.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 4.0e-18 94.7 110 56.4
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.0e-18 94.7 106 50.9
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.0e-18 94.7 106 51.9
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 5.2e-18 94.4 106 53.8
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.5e-17 92.8 107 52.3
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.5e-17 92.8 106 51.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-17 92.8 100 53.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.0e-17 92.4 62 72.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.6e-17 92.0 106 50.9
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.6e-17 92.0 106 50.9
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-17 92.0 95 53.7
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-17 92.0 106 50.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.6e-17 92.0 106 50.0
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.4e-17 91.7 106 50.9
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.4e-17 91.7 95 52.6
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.4e-17 91.7 105 53.3
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.4e-17 91.3 93 53.8
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 4.4e-17 91.3 105 51.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 4.4e-17 91.3 105 54.3
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 7.6e-17 90.5 99 51.5
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 7.6e-17 90.5 100 54.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 9.9e-17 90.1 67 67.2
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.7e-16 89.4 65 67.7
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.7e-16 89.4 104 53.8
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.7e-16 89.4 91 56.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.7e-16 89.4 107 50.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.9e-16 88.6 93 54.8
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.7e-16 88.2 108 49.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-16 88.2 97 51.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.7e-16 88.2 97 51.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 4.9e-16 87.8 65 64.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.9e-16 87.8 65 64.6
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.9e-16 87.8 101 51.5
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.4e-16 87.4 98 56.1
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.4e-16 87.4 95 51.6
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 8.3e-16 87.0 97 54.6
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 8.3e-16 87.0 99 56.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.3e-16 87.0 68 67.6
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-15 86.7 107 51.4
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.1e-15 86.7 98 51.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.4e-15 86.3 104 51.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.4e-15 86.3 110 50.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.9e-15 85.9 103 50.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.9e-15 85.9 100 47.0
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.9e-15 85.9 94 48.9
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.4e-15 85.5 98 52.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 3.2e-15 85.1 105 53.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.2e-15 85.1 65 66.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 3.2e-15 85.1 65 61.5
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.2e-15 85.1 95 49.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 4.1e-15 84.7 94 46.8
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 7.1e-15 84.0 84 52.4
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 9.2e-15 83.6 91 53.8
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 9.2e-15 83.6 106 47.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 9.2e-15 83.6 92 53.3
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 1.2e-14 83.2 91 50.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-14 82.8 75 64.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.6e-14 82.8 97 50.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.1e-14 82.4 57 71.9
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.1e-14 82.4 96 47.9
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 2.1e-14 82.4 98 52.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.7e-14 82.0 94 48.9
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.7e-14 82.0 96 53.1
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.7e-14 82.0 72 59.7
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.7e-14 82.0 100 48.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.5e-14 81.6 107 47.7
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.5e-14 81.6 87 49.4
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.5e-14 81.6 96 47.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 3.5e-14 81.6 67 59.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 4.6e-14 81.3 107 46.7
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.6e-14 81.3 87 49.4
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 6.0e-14 80.9 97 50.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.0e-14 80.9 96 51.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.8e-14 80.5 100 50.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.0e-13 80.1 105 49.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.0e-13 80.1 105 49.5
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.3e-13 79.7 89 53.9
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.3e-13 79.7 96 53.1
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.3e-13 79.7 93 49.5
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.7e-13 79.3 88 53.4
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.3e-13 79.0 105 49.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.3e-13 79.0 93 48.4
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.0e-13 78.6 93 49.5
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.1e-13 77.8 108 49.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 6.6e-13 77.4 100 49.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.6e-13 77.4 64 57.8
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.6e-13 77.0 75 57.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 8.6e-13 77.0 107 50.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.1e-12 76.6 70 57.1
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.1e-12 76.6 88 51.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.5e-12 76.3 97 51.5
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.5e-12 76.3 59 67.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.9e-12 75.9 63 61.9
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.9e-12 75.9 87 54.0
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 2.5e-12 75.5 70 57.1
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.3e-12 75.1 56 69.6
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.6e-12 74.3 70 57.1
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 7.3e-12 73.9 99 47.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 7.3e-12 73.9 107 42.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.8e-11 72.0 88 45.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.8e-11 72.0 91 46.2
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.8e-11 72.0 87 48.3
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.8e-11 72.0 53 69.8
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.6e-11 71.6 97 45.4
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.6e-11 71.6 94 47.9
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 6.2e-11 70.9 67 52.2
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.1e-11 70.5 81 50.6
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 8.1e-11 70.5 97 44.3
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.1e-10 68.6 90 42.2
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.1e-10 68.6 65 49.2
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 4.0e-10 68.2 65 56.9
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.0e-10 68.2 36 91.7
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 6.8e-10 67.4 54 63.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-09 66.2 98 40.8
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 2.0e-09 65.9 102 47.1
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 2.6e-09 65.5 95 47.4
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.6e-09 65.5 63 55.6
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.4e-09 64.7 80 48.8
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 5.8e-09 64.3 55 60.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.8e-09 64.3 93 46.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 7.6e-09 63.9 100 43.0
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.2e-08 62.4 108 45.4
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.2e-08 62.4 101 46.5
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.9e-08 62.0 85 41.2
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.9e-08 62.0 102 44.1
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 4.9e-08 61.2 93 46.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.9e-08 61.2 99 42.4
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.4e-07 59.7 105 43.8
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 4.2e-07 58.2 102 44.1


User provided reference genes

Program Settings