Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-153 545.8 277 100.0
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.1e-140 500.4 263 97.7
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.0e-139 499.2 264 96.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.2e-138 495.7 264 96.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.0e-135 486.9 264 95.1
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.0e-135 485.3 264 94.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.0e-135 485.3 264 94.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 6.6e-130 467.6 264 90.5
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 4.9e-109 398.3 262 76.3
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.3e-97 359.0 272 69.1
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 2.8e-96 355.9 262 68.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.4e-95 352.8 271 67.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 2.7e-91 339.3 279 63.8
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.0e-90 335.9 260 66.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 3.9e-90 335.5 282 63.1
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-89 334.0 260 65.8
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.3e-88 330.5 270 64.1
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.1e-87 325.9 266 65.4
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.9e-87 324.7 276 63.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 2.0e-86 323.2 270 63.3
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 9.9e-86 320.9 262 64.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.2e-84 315.5 270 63.3
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.2e-83 313.9 267 61.4
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-82 310.5 271 62.4
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.9e-82 308.9 266 62.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.5e-81 306.2 260 64.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.3e-81 305.8 271 61.3
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.3e-81 305.4 260 63.1
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 9.6e-81 304.3 268 60.8
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.6e-81 304.3 260 63.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.8e-79 300.1 281 58.7
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.1e-79 299.3 270 58.1
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 5.8e-78 295.0 255 61.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.7e-77 293.5 259 61.0
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.2e-77 293.1 252 58.7
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.9e-77 292.0 257 61.5
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.1e-76 290.8 262 58.4
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.4e-76 290.4 260 59.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.9e-76 290.0 265 59.2
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.4e-76 289.7 267 59.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.6e-75 287.0 265 58.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 7.9e-75 284.6 254 59.4
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.0e-74 284.3 273 55.7
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.0e-74 284.3 262 56.1
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-73 280.0 238 62.2
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.9e-73 280.0 258 60.5
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.5e-73 279.6 264 60.2
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.5e-73 279.6 259 58.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 9.6e-73 277.7 166 86.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.8e-72 276.2 257 58.8
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 8.1e-72 274.6 266 56.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-71 273.1 242 58.3
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 3.1e-71 272.7 277 54.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 4.0e-71 272.3 268 56.0
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.5e-70 270.4 269 57.2
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.5e-70 268.9 275 52.4
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.0e-69 267.7 271 53.1
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.8e-69 265.8 269 54.3
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.9e-69 265.4 230 59.6
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 4.9e-69 265.4 270 53.7
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.5e-69 265.0 262 52.7
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.1e-68 264.2 263 53.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.2e-68 262.7 259 53.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 7.1e-68 261.5 246 57.3
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 9.3e-68 261.2 262 52.3
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.7e-67 259.6 262 52.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.7e-66 255.0 259 52.5
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 6.7e-66 255.0 266 51.9
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.9e-65 253.4 269 52.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.3e-65 252.7 264 54.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 5.7e-65 251.9 259 51.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 9.6e-65 251.1 260 53.5
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.6e-64 250.4 253 56.1
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 3.7e-64 249.2 268 52.6
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 3.7e-64 249.2 265 53.6
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.4e-63 247.3 268 54.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.5e-62 243.8 173 67.6
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.6e-62 243.0 220 60.5
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.5e-62 242.3 260 49.6
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.0e-61 241.1 251 52.6
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.9e-61 239.6 258 53.1
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 8.5e-61 238.0 250 52.0
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-59 234.2 257 52.9
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-59 234.2 257 52.9
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.1e-59 233.4 277 46.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 6.1e-59 231.9 270 49.6
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 7.9e-59 231.5 274 46.7
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.8e-58 230.3 270 49.6
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.0e-58 229.6 260 49.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.1e-57 227.6 273 46.9
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.5e-57 227.3 270 47.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-57 226.9 251 50.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.3e-57 225.7 250 48.8
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.3e-56 224.2 254 51.2
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.2e-56 223.4 264 51.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.8e-56 223.0 254 46.5
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.8e-56 223.0 252 49.6
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 4.8e-56 222.2 265 49.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.2e-56 221.5 256 47.3
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.8e-55 220.3 251 50.6
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.4e-55 219.9 249 51.4
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.9e-55 218.4 264 49.6
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.9e-55 218.4 264 48.9
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.2e-54 217.6 263 49.4
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.5e-54 217.2 258 49.2
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 5.9e-54 215.3 262 50.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.7e-54 214.9 252 52.4
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 8.5e-53 211.5 254 49.6
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.1e-52 211.1 248 46.0
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.1e-52 211.1 251 50.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-52 210.7 260 45.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.9e-52 210.3 202 55.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.9e-52 210.3 270 48.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 2.5e-52 209.9 249 48.6
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.2e-52 209.5 263 48.3
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.2e-52 209.5 263 48.3
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.2e-52 209.1 258 48.4
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 5.5e-52 208.8 264 48.1
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.1e-51 206.8 251 49.0
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 7.9e-51 204.9 211 52.1
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.3e-50 203.4 167 59.3
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 6.7e-50 201.8 262 48.1
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.0e-49 200.3 249 47.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.6e-49 199.9 249 47.8
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 4.3e-49 199.1 262 44.7
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 7.4e-49 198.4 249 47.4
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 9.7e-49 198.0 194 53.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-48 196.8 194 54.1
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.4e-47 194.1 268 44.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 4.1e-47 192.6 194 52.6
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 6.9e-47 191.8 249 45.4
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-46 191.0 195 50.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-46 191.0 195 50.8
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.4e-44 184.1 254 42.9
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 9.4e-44 181.4 250 44.4
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-43 180.6 209 52.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.1e-43 180.3 257 42.8
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 6.1e-43 178.7 163 52.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.0e-42 176.4 116 69.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 6.7e-42 175.3 157 52.9
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.0e-41 173.7 273 39.9
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.7e-40 170.6 117 67.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.8e-40 169.9 150 55.3
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.6e-38 163.3 244 44.3
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-36 157.9 105 72.4
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.5e-36 156.8 138 55.1
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.3e-33 146.4 131 53.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.2e-25 121.3 119 48.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.2e-24 117.1 125 44.8
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-23 114.8 82 69.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 5.5e-20 102.4 249 31.7
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-16 91.3 70 60.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 3.1e-15 86.7 83 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 5.4e-15 85.9 90 42.2
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 5.0e-13 79.3 223 28.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 3.3e-12 76.6 159 30.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 7.3e-12 75.5 174 29.9


User provided reference genes

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