Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.8e-148 527.3 272 100.0
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 7.2e-89 331.3 170 100.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.4e-62 242.3 189 70.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 9.8e-62 241.1 191 66.5
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 4.9e-61 238.8 189 70.9
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 7.0e-60 235.0 189 68.8
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 7.0e-60 235.0 189 68.8
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.6e-59 233.8 189 68.3
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.6e-59 233.8 189 68.8
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.6e-59 232.3 189 68.3
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 4.6e-59 232.3 189 68.3
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.6e-59 232.3 189 67.7
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 5.9e-59 231.9 189 67.7
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 7.8e-59 231.5 190 67.4
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.0e-58 231.1 189 68.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.3e-58 230.7 189 67.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.3e-58 230.7 189 67.7
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.3e-58 230.7 189 67.7
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.3e-58 230.7 189 67.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.3e-58 229.9 189 67.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 3.0e-58 229.6 189 67.2
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 3.0e-58 229.6 189 66.1
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 3.9e-58 229.2 189 67.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 3.9e-58 229.2 189 67.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 3.9e-58 229.2 189 67.2
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.9e-58 229.2 197 63.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.0e-58 228.8 189 66.7
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 5.0e-58 228.8 189 66.7
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.0e-58 228.8 189 67.2
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.6e-58 228.4 189 67.2
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 8.6e-58 228.0 192 66.7
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.5e-57 227.3 189 66.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.5e-57 226.5 189 66.1
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.5e-57 226.5 189 66.1
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.5e-57 226.5 189 66.1
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 3.3e-57 226.1 189 66.1
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.3e-57 225.7 189 66.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.3e-57 225.7 189 66.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 5.6e-57 225.3 189 66.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.2e-56 224.2 189 65.6
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-56 224.2 189 65.6
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.6e-56 223.8 189 65.6
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.8e-56 223.0 189 66.1
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.8e-56 223.0 191 64.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.8e-56 223.0 189 65.6
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.8e-56 223.0 189 65.1
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.6e-56 222.6 189 65.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 3.6e-56 222.6 189 65.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.2e-56 221.9 192 64.1
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 6.2e-56 221.9 192 64.1
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 8.0e-56 221.5 189 65.1
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.0e-56 221.5 189 65.6
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.0e-55 221.1 189 64.0
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.4e-55 220.7 190 62.6
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.8e-55 220.3 189 63.5
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.3e-55 219.9 189 63.5
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.0e-55 219.2 189 64.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 4.0e-55 219.2 189 64.6
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 4.0e-55 219.2 189 64.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 6.8e-55 218.4 189 63.5
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.9e-55 218.0 189 64.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 8.9e-55 218.0 189 62.4
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.4e-54 216.1 110 100.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 4.4e-54 215.7 193 60.6
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 9.8e-54 214.5 180 65.6
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 9.8e-54 214.5 195 62.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.1e-52 211.1 189 60.8
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.2e-52 209.5 189 60.8
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.2e-52 209.5 189 63.5
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.0e-51 206.8 189 62.4
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.5e-51 206.1 190 61.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.8e-51 204.9 189 61.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.9e-50 202.6 189 58.7
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.6e-50 201.8 208 57.7
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 8.1e-48 194.9 189 54.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.1e-47 194.5 189 54.5
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.4e-47 194.1 189 55.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-44 183.0 173 61.3
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 7.1e-44 181.8 145 67.6
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.7e-43 179.9 189 55.6
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.6e-42 175.3 189 55.0
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.5e-41 174.1 189 56.1
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.3e-41 172.9 144 63.9
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 9.5e-41 171.4 192 52.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.6e-40 170.6 144 63.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.1e-40 170.2 177 55.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-39 167.9 86 97.7
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.3e-39 166.8 222 48.6
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 6.8e-39 165.2 141 63.1
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.0e-38 163.7 163 56.4
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.3e-37 161.0 192 51.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.9e-37 159.8 109 77.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 2.7e-35 153.3 189 49.2
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.6e-35 152.5 80 92.5
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 6.0e-35 152.1 84 90.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-34 151.4 80 93.8
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.0e-34 151.4 80 93.8
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.0e-34 151.4 79 93.7
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-34 151.0 81 91.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-34 150.6 79 94.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-34 150.2 80 92.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 3.0e-34 149.8 83 89.2
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.0e-34 149.8 83 88.0
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.0e-34 149.8 83 88.0
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 6.6e-34 148.7 79 92.4
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.5e-33 146.7 82 87.8
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.5e-33 146.7 82 87.8
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.5e-33 146.7 79 91.1
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.5e-33 146.7 79 91.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.3e-33 146.0 112 70.5
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 5.6e-33 145.6 79 89.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 5.6e-33 145.6 79 89.9
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.6e-33 144.8 82 85.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.2e-32 144.4 189 46.6
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.1e-32 143.7 81 84.0
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.6e-32 142.9 82 82.9
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 8.1e-32 141.7 84 82.1
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.1e-31 141.4 81 82.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.4e-31 141.0 189 45.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.4e-31 140.2 82 80.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.4e-31 140.2 129 59.7
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.0e-31 139.4 85 82.4
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.5e-30 137.5 81 81.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 2.6e-30 136.7 89 75.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.6e-30 136.7 79 82.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.6e-30 136.7 79 83.5
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.9e-29 133.3 78 83.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.9e-28 130.6 75 84.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.9e-28 130.6 192 40.1
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 2.1e-27 127.1 76 77.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.6e-27 125.9 133 56.4
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.3e-26 124.4 195 36.9
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.9e-25 120.6 133 54.9
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 4.3e-25 119.4 130 54.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 6.2e-24 115.5 189 37.6
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 6.2e-24 115.5 143 49.7
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.1e-23 114.8 181 37.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-22 111.3 77 75.3
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 5.8e-22 109.0 56 94.6
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 7.6e-22 108.6 57 91.2
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.7e-21 107.5 77 72.7
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 8.4e-21 105.1 179 39.1
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.1e-20 104.8 57 87.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.9e-20 104.0 57 87.7
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.9e-20 104.0 75 58.7
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 9.3e-20 101.7 73 74.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 9.3e-20 101.7 73 74.0
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.2e-19 101.3 73 74.0
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.1e-19 100.5 73 71.2
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.7e-19 100.1 73 71.2
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 3.5e-19 99.8 73 72.6
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 3.5e-19 99.8 73 72.6
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 1.3e-18 97.8 73 71.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.6e-16 90.9 163 39.3
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.5e-14 84.3 44 90.9
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.3e-10 70.5 58 63.8
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.4e-07 61.2 30 96.7
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.4e-07 61.2 29 100.0
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 7.6e-06 55.5 25 96.0


User provided reference genes

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