Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 7.3e-75 283.9 151 100.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.0e-52 210.3 151 80.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.3e-43 178.3 126 80.2
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 2.6e-27 125.9 125 64.8
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.2e-22 108.6 60 96.7
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 2.3e-20 102.8 121 53.7
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 5.2e-20 101.7 122 51.6
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.4e-17 93.6 125 51.2
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.4e-17 93.6 122 49.2
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 9.1e-17 90.9 122 50.0
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 2.0e-16 89.7 122 48.4
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.6e-16 89.4 123 48.0
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 4.5e-16 88.6 122 47.5
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 7.7e-16 87.8 129 48.8
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 7.7e-16 87.8 122 46.7
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 2.9e-15 85.9 122 45.9
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 3.8e-15 85.5 123 45.5
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 5.0e-15 85.1 115 46.1
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 6.5e-15 84.7 124 46.0
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 8.5e-15 84.3 67 64.2
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.1e-14 84.0 75 58.7
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.1e-14 84.0 75 58.7
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 1.1e-14 84.0 69 59.4
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 1.5e-14 83.6 127 48.0
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 3.2e-14 82.4 123 47.2
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 3.2e-14 82.4 125 44.8
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 3.2e-14 82.4 121 43.8
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 5.5e-14 81.6 68 63.2
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 7.2e-14 81.3 124 45.2
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 7.2e-14 81.3 124 45.2
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 7.2e-14 81.3 67 58.2
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.2e-13 80.5 123 46.3
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.6e-13 80.1 123 41.5
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.6e-13 80.1 67 61.2
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 2.1e-13 79.7 124 44.4
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 2.1e-13 79.7 65 61.5
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 4.7e-13 78.6 125 45.6
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 4.7e-13 78.6 67 55.2
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 4.7e-13 78.6 123 44.7
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 6.1e-13 78.2 125 44.0
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 8.0e-13 77.8 67 56.7
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 8.0e-13 77.8 122 45.1
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 1.0e-12 77.4 47 83.0
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 1.4e-12 77.0 125 44.8
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.4e-12 77.0 122 43.4
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.4e-12 77.0 122 43.4
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.4e-12 77.0 103 42.7
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.3e-12 76.3 64 59.4
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 2.3e-12 76.3 122 45.1
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 2.3e-12 76.3 67 55.2
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 2.3e-12 76.3 77 49.4
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 3.0e-12 75.9 67 52.2
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 3.0e-12 75.9 124 41.1
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 3.0e-12 75.9 64 59.4
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 3.0e-12 75.9 64 59.4
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 3.0e-12 75.9 121 43.0
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 4.0e-12 75.5 125 44.8
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 4.0e-12 75.5 103 42.7
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 5.2e-12 75.1 106 43.4
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 6.7e-12 74.7 75 53.3
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 6.7e-12 74.7 67 61.2
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 8.8e-12 74.3 64 54.7
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 8.8e-12 74.3 64 54.7
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 8.8e-12 74.3 127 40.9
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.5e-11 73.6 118 45.8
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.5e-11 73.6 118 45.8
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.5e-11 73.6 124 45.2
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.5e-11 73.6 70 54.3
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 2.0e-11 73.2 108 42.6
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 3.3e-11 72.4 74 50.0
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 4.4e-11 72.0 107 41.1
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 4.4e-11 72.0 68 58.8
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 4.4e-11 72.0 69 53.6
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 5.7e-11 71.6 118 39.8
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 5.7e-11 71.6 121 42.1
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 7.5e-11 71.2 66 56.1
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 7.5e-11 71.2 56 60.7
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 9.7e-11 70.9 124 38.7
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 1.3e-10 70.5 129 40.3
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 1.3e-10 70.5 122 42.6
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.7e-10 70.1 66 56.1
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 2.2e-10 69.7 107 43.0
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 4.8e-10 68.6 122 39.3
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 8.2e-10 67.8 69 53.6
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.1e-09 67.4 121 37.2
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 3.5e-08 62.4 47 66.0
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.2e-07 59.7 53 58.5
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 4.2e-06 55.5 65 47.7


User provided reference genes

Program Settings