Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.4e-206 721.5 488 100.0
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-200 703.4 488 98.2
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-167 593.2 490 82.4
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-161 572.8 488 82.2
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 3.3e-161 572.4 488 81.8
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.3e-161 572.4 488 81.6
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.6e-158 562.8 490 81.2
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.6e-147 525.8 488 74.2
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.0e-131 471.5 378 75.7
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.7e-128 463.8 495 71.7
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.6e-121 439.9 495 69.9
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.1e-111 407.9 319 73.7
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.9e-108 397.1 306 73.5
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.7e-46 190.7 375 49.9
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 4.2e-39 166.8 272 45.6
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 9.4e-39 165.6 286 42.7
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 6.1e-38 162.9 276 43.1
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.1e-38 162.9 250 45.6
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.0e-37 162.2 248 45.2
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.8e-37 161.4 387 37.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 3.0e-37 160.6 258 45.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.5e-36 158.3 250 44.8
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.3e-35 152.9 234 43.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.4e-34 151.0 278 44.6
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.1e-34 150.6 231 43.7
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 4.1e-34 150.2 376 37.2
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.5e-33 147.1 230 45.7
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.8e-32 143.7 275 38.9
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.5e-31 141.0 270 43.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.2e-31 140.6 261 46.0
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 9.4e-31 139.0 395 34.4
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.7e-30 137.5 261 44.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 6.1e-30 136.3 365 35.6
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.3e-29 134.4 245 40.8
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 4.0e-29 133.7 347 33.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.7e-29 132.9 253 40.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 8.8e-29 132.5 351 35.9
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.2e-28 132.1 276 39.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.2e-28 132.1 213 43.2
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.5e-28 131.7 253 40.3
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.0e-28 131.3 236 47.9
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.0e-28 131.3 299 36.5
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 4.4e-28 130.2 274 36.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.2e-27 127.9 215 41.4
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 3.1e-26 124.0 333 40.5
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 9.1e-26 122.5 293 40.6
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.9e-24 117.5 378 33.3
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 5.0e-24 116.7 214 40.7
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.9e-23 114.8 344 34.3
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 2.5e-23 114.4 325 36.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.2e-23 114.0 369 33.6
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 7.2e-23 112.8 329 32.8
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-21 108.6 143 40.6
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.4e-21 108.6 361 34.3
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.4e-21 108.6 245 36.3
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.0e-21 107.5 374 31.8
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 4.0e-21 107.1 275 37.5
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.2e-20 105.5 398 35.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.5e-20 105.1 322 32.9
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.5e-20 105.1 381 33.1
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.4e-20 103.6 229 34.9
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 5.7e-20 103.2 493 35.7
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 5.7e-20 103.2 264 35.2
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 9.8e-20 102.4 408 32.6
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.3e-19 102.1 316 36.7
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.3e-19 102.1 316 36.7
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.2e-19 101.3 264 36.7
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 2.4e-18 97.8 216 36.6
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 4.1e-18 97.1 280 36.8
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 7.0e-18 96.3 247 38.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 7.0e-18 96.3 343 35.9
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.6e-17 95.1 245 39.6
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.6e-17 95.1 245 39.6
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.6e-17 95.1 256 34.8
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 4.5e-17 93.6 246 35.4
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 5.9e-17 93.2 177 41.2
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.0e-16 92.4 284 33.8
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.0e-16 92.4 284 33.8
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.3e-16 92.0 284 33.8
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.3e-16 92.0 251 36.7
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.7e-16 91.7 255 38.0
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.3e-16 91.3 387 33.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.3e-16 91.3 285 31.9
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.9e-16 90.9 243 35.4
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 8.6e-16 89.4 248 34.7
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 1.1e-15 89.0 249 37.3
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.5e-15 88.6 377 28.4
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.9e-15 88.2 344 31.7
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 2.5e-15 87.8 245 35.9
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 3.2e-15 87.4 280 33.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.2e-15 87.0 272 33.1
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.2e-15 87.0 375 31.7
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 9.5e-15 85.9 246 32.9
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 1.2e-14 85.5 272 34.2
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.2e-14 85.5 247 35.6
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.6e-14 85.1 239 35.1
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-14 85.1 308 30.8
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.6e-14 85.1 274 34.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.6e-14 85.1 233 35.6
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.6e-14 85.1 276 34.1
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.6e-14 84.0 276 34.1
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 6.1e-14 83.2 278 34.5
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 6.1e-14 83.2 284 33.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 8.0e-14 82.8 297 31.3
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.0e-13 82.4 306 34.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.4e-13 82.0 341 29.3
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 3.0e-13 80.9 176 33.5
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 6.8e-13 79.7 275 34.2
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.8e-13 79.3 128 39.1
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 1.2e-12 79.0 176 32.4
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-12 78.2 398 31.2
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.4e-12 77.4 151 38.4
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 5.7e-12 76.6 315 31.1
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.5e-12 76.3 382 30.1
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.7e-11 75.1 282 30.5
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.7e-11 75.1 378 32.5
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.7e-11 75.1 273 30.8
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.2e-11 74.7 136 39.0
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 4.9e-11 73.6 128 38.3
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-10 72.4 263 31.6
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 4.1e-10 70.5 256 30.1
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 5.4e-10 70.1 274 31.0
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 7.0e-10 69.7 226 38.1
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 7.0e-10 69.7 169 32.0
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 9.2e-10 69.3 274 30.7
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 9.2e-10 69.3 274 30.7
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.7e-09 67.8 154 34.4
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 2.7e-09 67.8 257 29.6
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.5e-09 67.0 211 32.7
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 4.5e-09 67.0 309 29.8
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.3e-08 65.5 232 31.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.3e-07 60.8 141 32.6
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.6e-07 60.1 369 27.4
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 9.5e-07 59.3 140 31.4
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.2e-06 58.9 367 28.6
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 1.2e-06 58.9 47 63.8
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.7e-06 57.0 309 27.2
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 8.0e-06 56.2 47 61.7


User provided reference genes

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