Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0520 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.7e-65 251.1 136 100.0
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.2e-38 162.5 90 96.7
FAN05G3914 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.9e-38 162.2 89 97.8
FAN09G4271 Fragaria x ananassa HOM05D000643 ORTHO05D006172 2.9e-38 162.2 89 97.8
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.9e-38 161.4 90 95.6
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.9e-38 161.4 90 95.6
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 1.9e-37 159.5 90 94.4
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 4.2e-37 158.3 90 94.4
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.2e-37 158.3 90 94.4
FAN12G1418 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.6e-33 146.4 80 96.2
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 2.1e-28 129.4 90 76.7
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 1.3e-27 126.7 90 74.4
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 1.8e-27 126.3 90 75.6
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 3.6e-20 102.1 90 61.1
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 7.9e-20 100.9 90 58.9
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 1.0e-19 100.5 90 60.0
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 1.0e-19 100.5 90 58.9
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 1.0e-19 100.5 90 58.9
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 1.8e-19 99.8 90 58.9
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 2.5e-18 95.9 90 56.7
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 7.4e-18 94.4 90 56.7
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 2.2e-17 92.8 92 54.3
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 2.2e-17 92.8 92 53.3
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 4.8e-17 91.7 90 56.7
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 8.2e-17 90.9 90 55.6
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 1.1e-16 90.5 90 53.3
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 4.1e-16 88.6 93 54.8
Actinidia40144 Actinidia chinensis HOM05D000439 ORTHO05D006172 5.3e-16 88.2 125 45.6
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 9.1e-16 87.4 95 53.7
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 9.1e-16 87.4 93 54.8
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 1.2e-15 87.0 93 51.6
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 1.5e-15 86.7 92 52.2
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 1.5e-15 86.7 91 51.6
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 3.4e-15 85.5 95 50.5
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 5.9e-15 84.7 95 50.5
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 5.9e-15 84.7 92 51.1
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 7.7e-15 84.3 92 54.3
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 7.7e-15 84.3 92 51.1
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 7.7e-15 84.3 97 52.6
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 1.3e-14 83.6 96 51.0
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 1.3e-14 83.6 95 49.5
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 1.7e-14 83.2 92 50.0
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 2.2e-14 82.8 89 52.8
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 2.2e-14 82.8 90 54.4
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.9e-14 82.4 96 47.9
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 2.9e-14 82.4 92 51.1
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 5.0e-14 81.6 96 46.9
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 5.0e-14 81.6 97 47.4
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 5.0e-14 81.6 90 53.3
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 6.5e-14 81.3 90 48.9
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 6.5e-14 81.3 92 47.8
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 6.5e-14 81.3 92 47.8
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 6.5e-14 81.3 90 53.3
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 6.5e-14 81.3 93 50.5
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 8.5e-14 80.9 90 51.1
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 1.1e-13 80.5 97 47.4
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.4e-13 80.1 98 45.9
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 1.9e-13 79.7 94 46.8
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 1.9e-13 79.7 99 45.5
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.9e-13 79.7 96 45.8
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 2.5e-13 79.3 92 53.3
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 3.2e-13 79.0 94 46.8
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 3.2e-13 79.0 94 50.0
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 3.2e-13 79.0 90 52.2
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 4.2e-13 78.6 96 45.8
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 7.2e-13 77.8 103 44.7
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 9.4e-13 77.4 94 48.9
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 1.6e-12 76.6 94 48.9
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 1.6e-12 76.6 94 48.9
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 1.6e-12 76.6 94 48.9
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 1.6e-12 76.6 90 46.7
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 2.1e-12 76.3 90 47.8
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.1e-12 76.3 90 50.0
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 2.7e-12 75.9 91 46.2
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 2.7e-12 75.9 96 44.8
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 4.7e-12 75.1 92 45.7
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 4.7e-12 75.1 95 45.3
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 4.7e-12 75.1 94 44.7
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 6.1e-12 74.7 92 44.6
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 7.9e-12 74.3 95 47.4
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 1.4e-11 73.6 95 41.1
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 1.4e-11 73.6 98 43.9
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 1.8e-11 73.2 92 44.6
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 3.0e-11 72.4 96 45.8
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 3.0e-11 72.4 92 50.0
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 3.9e-11 72.0 94 45.7
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 3.9e-11 72.0 100 43.0
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 5.1e-11 71.6 93 44.1
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 6.7e-11 71.2 90 46.7
BraA05t21505Z Brassica rapa HOM05D000439 ORTHO05D006172 8.8e-11 70.9 99 43.4
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 1.5e-10 70.1 91 45.1
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 3.3e-10 68.9 96 43.8
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 3.3e-10 68.9 96 43.8
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 3.3e-10 68.9 96 43.8
Manes.02G074901 Manihot esculenta HOM05D000439 ORTHO05D006172 3.3e-10 68.9 89 46.1
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 4.4e-10 68.6 92 45.7
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 7.4e-10 67.8 92 43.5
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 7.4e-10 67.8 92 43.5
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 1.3e-09 67.0 98 39.8
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 1.3e-09 67.0 93 41.9
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 1.3e-09 67.0 90 43.3
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 1.7e-09 66.6 96 43.8
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 1.7e-09 66.6 92 44.6
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 2.2e-09 66.2 92 38.0
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 2.8e-09 65.9 97 43.3
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 3.7e-09 65.5 94 42.6
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 4.8e-09 65.1 92 42.4
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 4.1e-08 62.0 90 40.0
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 7.0e-08 61.2 93 38.7
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 1.5e-07 60.1 73 53.4
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 1.5e-07 60.1 93 41.9
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 1.5e-07 60.1 92 41.3
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 2.0e-07 59.7 99 34.3
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 4.5e-07 58.5 99 34.3
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 5.9e-07 58.2 91 40.7
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 5.9e-07 58.2 92 41.3
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 1.0e-06 57.4 92 35.9
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 1.3e-06 57.0 95 37.9
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 2.2e-06 56.2 62 48.4
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 6.5e-06 54.7 90 41.1


User provided reference genes

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