Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.2e-109 399.8 204 100.0
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.0e-108 396.7 204 99.0
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-108 395.6 204 98.5
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 5.2e-108 394.4 204 98.0
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.4e-106 387.5 204 97.1
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 4.1e-105 384.8 204 96.1
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.1e-102 376.7 204 95.6
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 3.1e-92 342.0 207 86.0
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 3.7e-90 335.1 202 83.2
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 1.1e-89 333.6 195 85.6
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 2.4e-89 332.4 195 86.2
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 1.2e-88 330.1 198 83.3
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 4.6e-88 328.2 198 82.3
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 3.9e-87 325.1 197 82.7
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.5e-86 323.2 196 84.7
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.9e-86 322.8 196 84.7
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 2.5e-86 322.4 196 84.7
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 4.3e-86 321.6 199 80.4
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 1.2e-85 320.1 206 79.6
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 3.6e-85 318.5 202 79.2
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.4e-84 316.6 201 79.1
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 1.8e-84 316.2 198 82.8
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 1.8e-84 316.2 200 80.0
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 1.8e-84 316.2 197 83.2
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 1.8e-84 316.2 204 77.9
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 3.1e-84 315.5 207 77.3
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 4.0e-84 315.1 196 82.7
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 8.9e-84 313.9 196 79.6
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 5.8e-83 311.2 204 77.0
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 1.7e-82 309.7 198 78.8
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 6.4e-82 307.8 207 76.3
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 8.4e-82 307.4 208 76.0
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 2.4e-81 305.8 208 76.4
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 3.2e-81 305.4 197 78.7
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 9.2e-81 303.9 202 74.3
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 9.2e-81 303.9 205 76.1
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 1.6e-80 303.1 195 77.9
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.3e-79 300.1 202 73.8
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 2.3e-79 299.3 204 74.0
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 1.5e-78 296.6 195 75.9
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 5.6e-78 294.7 207 72.0
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 5.6e-78 294.7 206 75.7
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 7.3e-78 294.3 206 76.2
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.6e-78 293.9 204 78.4
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 3.6e-77 292.0 195 77.4
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 1.8e-76 289.7 200 71.0
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 2.4e-76 289.3 197 74.6
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 5.2e-76 288.1 197 74.6
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 5.2e-76 288.1 200 75.0
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 6.8e-76 287.7 197 74.1
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 8.9e-76 287.3 197 74.1
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.2e-75 287.0 195 74.9
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 2.6e-75 285.8 197 73.6
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 4.4e-75 285.0 212 70.8
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 7.6e-75 284.3 201 72.6
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 7.6e-75 284.3 197 76.6
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 7.6e-75 284.3 205 71.2
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.9e-74 282.3 194 74.7
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 6.4e-74 281.2 206 72.3
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 8.4e-74 280.8 197 76.6
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.4e-73 280.0 205 71.2
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.9e-73 279.6 206 70.9
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 7.1e-73 277.7 199 71.4
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 1.2e-72 276.9 195 72.8
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 1.6e-72 276.6 203 70.9
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 2.1e-72 276.2 208 68.3
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.1e-72 276.2 204 70.6
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 4.6e-72 275.0 209 67.0
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 2.3e-71 272.7 202 67.8
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 3.0e-71 272.3 196 70.9
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 8.7e-71 270.8 205 69.3
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 4.3e-70 268.5 205 68.8
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.3e-69 266.9 205 67.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 2.8e-69 265.8 201 69.2
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 6.2e-69 264.6 196 68.9
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 6.2e-69 264.6 208 66.3
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 6.2e-69 264.6 205 67.8
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 8.1e-69 264.2 202 65.8
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.8e-68 263.1 205 67.8
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 5.3e-68 261.5 202 66.8
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 6.9e-68 261.2 202 66.8
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 7.6e-67 257.7 196 70.9
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 2.2e-66 256.1 204 66.2
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.1e-65 253.8 185 71.4
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 1.6e-64 250.0 226 58.8
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 3.5e-64 248.8 192 69.3
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 5.1e-63 245.0 205 61.0
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 6.6e-63 244.6 202 61.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 8.7e-63 244.2 204 62.7
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 4.3e-62 241.9 225 57.8
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-60 236.9 184 65.8
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 7.1e-57 224.6 202 60.4
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 3.9e-55 218.8 194 60.8
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 5.1e-55 218.4 143 79.0
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 1.9e-54 216.5 203 60.1
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 9.6e-54 214.2 180 62.2
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 6.9e-52 208.0 183 60.7
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 2.2e-42 176.4 142 65.5
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 8.5e-42 174.5 143 62.9
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 2.5e-41 172.9 201 49.8
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.2e-40 170.6 135 66.7
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 5.1e-39 165.2 210 45.7
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 1.1e-36 157.5 169 55.0
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-27 127.5 92 68.5
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-24 117.5 86 68.6
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 4.1e-20 102.4 105 52.4
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 2.5e-17 93.2 198 39.9
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 9.4e-17 91.3 66 68.2
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 2.1e-16 90.1 144 38.2
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 3.6e-16 89.4 66 66.7
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 4.7e-16 89.0 59 74.6
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.0e-15 85.9 71 59.2
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 4.4e-14 82.4 45 86.7
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 9.7e-14 81.3 70 58.6
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 9.7e-14 81.3 70 58.6
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 9.7e-14 81.3 70 58.6
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.8e-13 79.7 70 58.6
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 6.3e-13 78.6 70 57.1
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.3e-13 78.6 70 57.1
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.2e-13 78.2 70 57.1
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 2.2e-10 70.1 95 49.5
A01p23910 Brassica napus HOM05D006363 ORTHO05D007920 4.4e-06 55.8 50 56.0
BraA01t02298Z Brassica rapa HOM05D006363 ORTHO05D007920 4.4e-06 55.8 50 56.0
Nitab4.5_0006622g0070 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.7e-06 55.5 66 51.5


User provided reference genes

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