Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0392 Fragaria x ananassa HOM05D018642 ORTHO05D017897 7.7e-77 290.4 149 100.0
FAN10G1565 Fragaria x ananassa HOM05D018642 ORTHO05D017897 4.5e-61 238.0 149 85.9
FAN05G3904 Fragaria x ananassa HOM05D018642 ORTHO05D017897 5.4e-22 108.2 119 57.1
FvH4_6g40844 Fragaria vesca HOM05D000023 ORTHO05D000014 3.8e-15 85.5 110 48.2
FAN05G3912 Fragaria x ananassa HOM05D000855 ORTHO05D017897 5.6e-11 71.6 95 46.3
FvH4_4g02102 Fragaria vesca HOM05D018642 ORTHO05D017897 3.7e-10 68.9 42 83.3
FAN02G2622 Fragaria x ananassa HOM05D018642 ORTHO05D017897 6.9e-09 64.7 91 46.2
Atru.chr13.188 Acer truncatum HOM05D000983 ORTHO05D001922 2.2e-07 59.7 30 90.0
FvH4_5g23531 Fragaria vesca HOM05D000023 ORTHO05D000014 2.2e-07 59.7 104 40.4
COL.COLO4_26062 Corchorus olitorius HOM05D000983 ORTHO05D001922 6.4e-07 58.2 30 90.0
Duzib093G2100 Durio zibethinus HOM05D000983 ORTHO05D001922 6.4e-07 58.2 30 90.0
FAN15G0491 Fragaria x ananassa HOM05D000983 ORTHO05D001922 6.4e-07 58.2 30 90.0
Thecc.08G054200 Theobroma cacao HOM05D000983 ORTHO05D001922 6.4e-07 58.2 30 90.0
EL10Ac1g02044 Beta vulgaris HOM05D000983 ORTHO05D001922 8.4e-07 57.8 31 83.9
Cpa.g.sc26.242 Carica papaya HOM05D000983 ORTHO05D001922 8.4e-07 57.8 30 86.7
Dinv31909 Davidia involucrata HOM05D000983 ORTHO05D001922 8.4e-07 57.8 32 87.5
HanXRQChr08g0215691 Helianthus annuus HOM05D000983 ORTHO05D001922 8.4e-07 57.8 30 86.7
Potri.002G014300 Populus trichocarpa HOM05D000983 ORTHO05D001922 8.4e-07 57.8 30 86.7
Glyma.14G222600 Glycine max HOM05D000983 ORTHO05D001922 1.1e-06 57.4 37 75.7
Lalb_Chr19g0131631 Lupinus albus HOM05D000983 ORTHO05D001922 1.1e-06 57.4 37 75.7
RcHm_v2.0_Chr6g0303841 Rosa chinensis HOM05D000983 ORTHO05D001922 1.1e-06 57.4 30 90.0
CiPaw.07G142000 Carya illinoinensis HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
AUR62013843 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 86.7
AUR62013844 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.4e-06 57.0 43 62.8
AUR62036756 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.4e-06 57.0 43 62.8
AUR62036762 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 86.7
ECA233G4007 Erigeron canadensis HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
Lsat_1_v5_gn_8_29040 Lactuca sativa HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
Lj5g0018308 Lotus japonicus HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
Manes.05G141400 Manihot esculenta HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
Sc26g0004540 Simmondsia chinensis HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
TWI56G1107 Tripterygium wilfordii HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
vmacro21841 Vaccinium macrocarpon HOM05D000983 ORTHO05D001922 1.4e-06 57.0 30 90.0
CSS0008836 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 86.7
CANSAT25G3388 Cannabis sativa HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 86.7
Gohir.A06G000800 Gossypium hirsutum HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 86.7
Gorai.010G001000 Gossypium raimondii HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 86.7
Psat6g001000 Pisum sativum HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 86.7
TPR.G26412 Trifolium pratense HOM05D000983 ORTHO05D001922 1.9e-06 56.6 30 90.0
Aa31LG4G6250 Aethionema arabicum HOM05D000983 ORTHO05D001922 2.4e-06 56.2 43 62.8
BcaC08g47107 Brassica carinata HOM05D000983 ORTHO05D001922 2.4e-06 56.2 30 86.7
BcaNung05115 Brassica carinata HOM05D000983 ORTHO05D001922 2.4e-06 56.2 30 86.7
Thhalv10018631m.g Eutrema salsugineum HOM05D000983 ORTHO05D001922 2.4e-06 56.2 30 86.7
SalBow7G1781 Salvia bowleyana HOM05D000983 ORTHO05D001922 2.4e-06 56.2 30 86.7
AL2G36170 Arabidopsis lyrata HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
AT1G76130 Arabidopsis thaliana HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
Gohir.A05G255400 Gossypium hirsutum HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
Gohir.D05G256900 Gossypium hirsutum HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
Gorai.009G268400 Gossypium raimondii HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
Medtr1g026170 Medicago truncatula HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 86.7
Sabra02G0011400 Salix brachista HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
SalBow8G1360 Salvia bowleyana HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 86.7
THA.LOC104813768 Tarenaya hassleriana HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 83.3
TAR625G0028 Trochodendron aralioides HOM05D000983 ORTHO05D001922 3.2e-06 55.8 30 86.7
Ah.11g040570 Amaranthus hybridus HOM05D000983 ORTHO05D001922 4.2e-06 55.5 30 83.3
DCAR_016745 Daucus carota HOM05D000983 ORTHO05D001922 4.2e-06 55.5 30 83.3
FvH4_2g37840 Fragaria vesca HOM05D000983 ORTHO05D001922 4.2e-06 55.5 30 86.7
Lj4A16G126 Lonicera japonica HOM05D000983 ORTHO05D001922 4.2e-06 55.5 30 86.7
QL02p013395 Quercus lobata HOM05D000983 ORTHO05D001922 4.2e-06 55.5 30 86.7
Aqoxy6G01875 Aquilegia oxysepala HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
arahy.Tifrunner.gnm1.ann1.2SN1MA Arachis hypogaea HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
arahy.Tifrunner.gnm1.ann1.5SXX56 Arachis hypogaea HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
CSS0024586 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 83.3
Carub.0002s2301 Capsella rubella HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 83.3
Ciclev10001348m.g Citrus clementina HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
Cc06_g08480 Coffea canephora HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
Migut.J01641 Erythranthe guttata HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
Hma1.2p1_1260F.1_g270970 Hydrangea macrophylla HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
Phvul.001G001900 Phaseolus vulgaris HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 83.3
Prupe.1G357800 Prunus persica HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
Rhsim06G0009900 Rhododendron simsii HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
unitig_0.g2095 Utricularia gibba HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 86.7
VMungo0647G0618 Vigna mungo HOM05D000983 ORTHO05D001922 5.5e-06 55.1 30 83.3
CAN.G311.88 Capsicum annuum HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 86.7
CiPaw.08G070100 Carya illinoinensis HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
Eucgr.F03529 Eucalyptus grandis HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
MD08G1006000 Malus domestica HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
MD15G1005200 Malus domestica HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
PSO541G6376 Papaver somniferum HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 86.7
PSO675G0993 Papaver somniferum HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 86.7
SGA_v2.0_scaffold275G46549 Striga asiatica HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
GSVIVG01008714001 Vitis vinifera HOM05D000983 ORTHO05D001922 7.1e-06 54.7 30 83.3
MSTRG.25284 Avicennia marina HOM05D000983 ORTHO05D001922 9.3e-06 54.3 30 80.0
Ca_13488_v3 Cicer arietinum L. HOM05D000983 ORTHO05D001922 9.3e-06 54.3 30 83.3
Sp5g31260 Schrenkiella parvula HOM05D000983 ORTHO05D001922 9.3e-06 54.3 30 83.3


User provided reference genes

Program Settings