Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.1e-67 256.9 128 100.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.8e-65 250.8 128 98.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.0e-53 211.8 110 96.4
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 3.7e-51 204.9 102 100.0
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.7e-51 204.9 102 100.0
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.1e-50 203.4 102 99.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-48 195.7 102 98.0
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.2e-47 191.8 102 97.1
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 7.4e-44 180.6 102 92.2
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 8.2e-19 97.4 100 60.0
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 2.4e-18 95.9 116 49.1
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 9.1e-18 94.0 101 51.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 5.9e-17 91.3 103 50.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.7e-16 89.7 100 51.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 2.9e-16 89.0 101 51.5
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.5e-16 87.8 100 49.0
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-15 87.0 103 45.6
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 3.2e-15 85.5 104 46.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 3.2e-15 85.5 106 49.1
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.2e-15 85.1 106 48.1
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.1e-14 82.8 103 46.6
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 2.7e-14 82.4 117 46.2
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.7e-14 82.4 104 48.1
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 3.6e-14 82.0 110 42.7
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.6e-14 82.0 92 51.1
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.7e-14 81.6 89 51.7
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 6.1e-14 81.3 97 48.5
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 8.0e-14 80.9 100 47.0
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.0e-14 80.9 100 50.0
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 8.0e-14 80.9 104 44.2
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.4e-13 80.1 100 50.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.8e-13 79.7 143 39.2
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.8e-13 79.7 106 43.4
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.3e-13 79.3 53 67.9
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-13 79.0 102 46.1
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-13 79.0 102 46.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-13 79.0 102 46.1
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.0e-13 79.0 92 46.7
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.8e-13 77.8 53 66.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 8.8e-13 77.4 94 44.7
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 8.8e-13 77.4 102 48.0
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-12 77.0 85 51.8
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-12 77.0 85 51.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.5e-12 76.6 107 43.9
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-12 76.6 85 51.8
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.5e-12 76.6 53 66.0
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.6e-12 75.9 111 43.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.6e-12 75.9 92 45.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.6e-12 75.9 92 45.7
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 5.7e-12 74.7 54 68.5
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.7e-12 74.7 100 44.0
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 7.5e-12 74.3 110 42.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 9.8e-12 73.9 99 45.5
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.3e-11 73.6 97 42.3
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.3e-11 73.6 112 41.1
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.3e-11 73.6 106 44.3
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.2e-11 72.8 58 62.1
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 2.8e-11 72.4 94 46.8
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.7e-11 72.0 94 44.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.7e-11 72.0 84 47.6
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 6.3e-11 71.2 68 52.9
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 6.3e-11 71.2 92 46.7
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.3e-11 70.9 107 43.9
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.1e-10 70.5 65 56.9
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.1e-10 70.5 107 44.9
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.1e-10 70.5 70 54.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.4e-10 70.1 64 59.4
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-10 70.1 59 57.6
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.8e-10 69.7 102 46.1
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.8e-10 69.7 108 41.7
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 2.4e-10 69.3 57 63.2
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.4e-10 69.3 107 43.9
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.4e-10 69.3 84 46.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.1e-10 68.9 59 59.3
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 5.4e-10 68.2 68 55.9
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.0e-10 67.8 89 41.6
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 7.0e-10 67.8 102 45.1
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 9.1e-10 67.4 90 47.8
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.2e-09 67.0 76 47.4
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.2e-09 67.0 56 57.1
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.6e-09 66.6 83 48.2
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.7e-09 65.9 85 45.9
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 3.5e-09 65.5 84 45.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.5e-09 65.5 116 42.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 4.5e-09 65.1 63 52.4
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 4.5e-09 65.1 76 48.7
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 7.7e-09 64.3 57 57.9
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.0e-08 63.9 74 47.3
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.0e-08 63.9 62 53.2
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.7e-08 63.2 85 49.4
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 2.2e-08 62.8 79 45.6
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.9e-08 62.4 117 38.5
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.8e-08 62.0 78 52.6
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.8e-08 62.0 57 52.6
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.8e-08 62.0 57 52.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.8e-08 62.0 57 52.6
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 3.8e-08 62.0 57 57.9
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 5.0e-08 61.6 68 50.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 6.5e-08 61.2 84 44.0
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 6.5e-08 61.2 102 43.1
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 8.5e-08 60.8 71 52.1
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.5e-08 60.8 100 38.0
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-07 60.5 82 43.9
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.1e-07 60.5 96 42.7
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 1.5e-07 60.1 90 42.2
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 1.5e-07 60.1 79 41.8
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.9e-07 59.7 102 37.3
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-07 59.3 57 52.6
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.5e-07 59.3 114 35.1
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.2e-07 58.9 55 52.7
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.2e-07 58.9 101 38.6
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 3.2e-07 58.9 54 51.9
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 3.2e-07 58.9 54 51.9
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.2e-07 58.9 86 39.5
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.5e-07 58.2 86 39.5
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 5.5e-07 58.2 90 41.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 7.2e-07 57.8 92 42.4
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 7.2e-07 57.8 102 36.3
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.6e-06 56.6 52 55.8
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-06 56.6 104 37.5
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 1.6e-06 56.6 76 50.0
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.1e-06 56.2 101 38.6
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 2.7e-06 55.8 92 37.0
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.6e-06 55.5 119 31.9
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 3.6e-06 55.5 100 40.0
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 3.6e-06 55.5 57 50.9
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 4.7e-06 55.1 76 40.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.1e-06 54.7 100 39.0
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 6.1e-06 54.7 62 41.9
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.0e-06 54.3 57 47.4


User provided reference genes

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