Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.5e-68 263.5 132 100.0
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.0e-67 259.6 132 99.2
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 1.6e-65 254.6 132 96.2
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 1.2e-63 248.4 132 95.5
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.1e-61 240.0 132 90.9
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 9.5e-58 228.8 125 91.2
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.9e-53 214.5 139 78.4
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 5.8e-47 193.0 131 75.6
MD01G1232900 Malus domestica HOM05D007456 ORTHO05D009411 4.0e-24 117.1 120 52.5
Prupe.2G323300 Prunus persica HOM05D007456 ORTHO05D009411 5.8e-23 113.2 121 54.5
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 2.1e-17 94.7 105 46.7
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 6.3e-17 93.2 105 46.7
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 5.3e-16 90.1 122 45.9
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 5.3e-16 90.1 76 52.6
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 5.3e-16 90.1 71 56.3
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 2.6e-15 87.8 60 65.0
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 2.6e-15 87.8 61 65.6
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 2.6e-15 87.8 61 65.6
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 1.0e-14 85.9 73 57.5
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 1.7e-14 85.1 76 53.9
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 1.7e-14 85.1 76 53.9
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 2.2e-14 84.7 76 50.0
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 6.5e-14 83.2 79 53.2
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 1.1e-13 82.4 119 45.4
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.9e-13 81.6 136 41.2
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 2.5e-13 81.3 61 63.9
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 3.2e-13 80.9 73 54.8
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 5.5e-13 80.1 61 62.3
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 9.3e-13 79.3 61 60.7
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 9.3e-13 79.3 116 44.8
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 1.2e-12 79.0 123 43.9
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.6e-12 78.6 148 35.1
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 2.1e-12 78.2 124 38.7
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 2.1e-12 78.2 64 56.2
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 2.7e-12 77.8 60 58.3
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 3.5e-12 77.4 135 40.0
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 3.5e-12 77.4 144 41.0
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 6.1e-12 76.6 87 43.7
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 1.8e-11 75.1 73 54.8
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 6.7e-11 73.2 81 46.9
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 8.7e-11 72.8 133 39.8
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 8.7e-11 72.8 60 55.0
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 1.1e-10 72.4 68 54.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.1e-10 72.4 99 44.4
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.5e-10 72.0 92 40.2
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 1.5e-10 72.0 132 32.6
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 2.5e-10 71.2 36 100.0
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.5e-10 71.2 36 100.0
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 3.3e-10 70.9 60 50.0
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 5.7e-10 70.1 131 38.9
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 7.4e-10 69.7 77 44.2
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 9.7e-10 69.3 60 48.3
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 9.7e-10 69.3 72 50.0
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 1.3e-09 68.9 62 48.4
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 1.3e-09 68.9 69 50.7
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 1.6e-09 68.6 77 39.0
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 2.2e-09 68.2 71 46.5
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 2.2e-09 68.2 84 41.7
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.8e-09 67.8 58 53.4
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 4.8e-09 67.0 71 45.1
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 4.8e-09 67.0 67 50.7
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 4.8e-09 67.0 111 41.4
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 1.1e-08 65.9 71 45.1
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 1.1e-08 65.9 71 45.1
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 1.1e-08 65.9 71 45.1
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 3.1e-08 64.3 71 45.1
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 3.1e-08 64.3 60 45.0
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 4.1e-08 63.9 60 45.0
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 4.1e-08 63.9 119 37.0
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 9.0e-08 62.8 66 47.0
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 1.2e-07 62.4 71 43.7
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 3.4e-07 60.8 36 77.8
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 4.5e-07 60.5 45 60.0
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.3e-06 58.9 50 52.0
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.9e-06 57.8 50 50.0
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 5.0e-06 57.0 86 38.4
CANSAT54G1256 Cannabis sativa HOM05D007456 ORTHO05D028426 6.5e-06 56.6 114 35.1


User provided reference genes

Program Settings