Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.3e-260 902.1 617 100.0
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.2e-254 880.6 619 98.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.7e-216 755.7 663 76.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.8e-213 745.7 652 83.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.5e-190 669.5 654 69.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.5e-177 625.2 502 91.2
FAN24G2560 Fragaria x ananassa HOM05D012506 ORTHO05D046285 2.1e-88 330.9 364 66.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 7.2e-60 236.1 652 36.3
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 6.1e-59 233.0 646 36.7
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.2e-53 214.5 674 35.9
FAN20G1396 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.7e-49 199.9 241 64.7
FAN20G3051 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.7e-49 199.1 290 60.3
FAN15G2281 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.7e-48 197.2 240 64.6
FvH4_2g06690 Fragaria vesca HOM05D012506 ORTHO05D046285 5.3e-47 193.4 237 63.3
FvH4_5g14120 Fragaria vesca HOM05D012506 ORTHO05D003557 2.0e-41 174.9 122 82.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.4e-31 142.1 271 41.7
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.0e-26 125.9 231 43.7
FvH4_2g06700 Fragaria vesca HOM05D012506 ORTHO05D003557 7.5e-25 119.8 102 73.5
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.7e-24 118.6 298 36.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.8e-24 117.9 298 35.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.7e-24 117.5 409 33.3
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.4e-23 115.5 380 33.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.1e-23 114.4 312 36.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.5e-22 110.9 317 34.7
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.0e-21 107.1 266 36.8
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 6.5e-21 106.7 282 36.2
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 8.5e-21 106.3 214 38.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.5e-20 104.8 274 34.3
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.2e-19 102.4 274 37.2
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-19 100.9 272 35.3
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 6.1e-19 100.1 271 34.7
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 8.0e-19 99.8 194 38.1
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 8.0e-19 99.8 237 41.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.4e-18 99.0 356 32.3
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.4e-18 99.0 276 35.9
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 3.0e-18 97.8 270 34.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-18 97.8 291 34.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 6.8e-18 96.7 271 33.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 8.8e-18 96.3 325 32.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 8.8e-18 96.3 330 33.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-17 95.1 179 41.9
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-17 95.1 220 35.0
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.0e-17 95.1 258 33.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.6e-17 94.7 232 35.8
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.6e-17 94.7 136 45.6
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 3.4e-17 94.4 297 31.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.4e-17 94.4 332 31.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-17 94.4 283 34.3
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 5.7e-17 93.6 319 30.4
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 5.7e-17 93.6 359 31.5
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 5.7e-17 93.6 337 32.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 5.7e-17 93.6 304 32.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 7.5e-17 93.2 387 28.2
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.3e-16 92.4 312 32.1
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.3e-16 92.4 699 26.3
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.7e-16 92.0 244 36.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.2e-16 91.7 255 34.1
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.8e-16 91.3 248 34.7
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.8e-16 91.3 317 32.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.7e-16 90.9 359 29.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.7e-16 90.9 361 28.8
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 4.9e-16 90.5 332 29.8
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 4.9e-16 90.5 299 35.8
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.9e-16 90.5 229 37.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.3e-16 90.1 296 35.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 6.3e-16 90.1 200 40.0
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.3e-16 89.7 289 32.5
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.1e-15 89.4 710 25.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.8e-15 88.6 237 35.9
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.8e-15 88.6 229 37.1
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-15 88.2 172 40.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.4e-15 88.2 172 40.1
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 2.4e-15 88.2 360 30.3
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 2.4e-15 88.2 172 39.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.4e-15 88.2 188 40.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 3.1e-15 87.8 309 31.1
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.1e-15 87.8 237 36.3
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.1e-15 87.8 146 45.2
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.4e-15 87.0 355 29.9
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 5.4e-15 87.0 302 31.5
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 7.0e-15 86.7 387 28.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 7.0e-15 86.7 223 35.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 7.0e-15 86.7 223 35.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 7.0e-15 86.7 223 35.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.2e-14 85.9 333 30.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.2e-14 85.9 242 33.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.2e-14 85.9 359 30.6
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.6e-14 85.5 355 29.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.0e-14 85.1 361 31.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.7e-14 84.7 361 31.6
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.7e-14 84.7 272 33.1
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.5e-14 84.3 716 26.4
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.5e-14 84.3 233 36.1
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.5e-14 84.0 289 33.2
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.5e-14 84.0 309 29.4
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 7.7e-14 83.2 316 30.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-13 82.4 258 31.4
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 2.9e-13 81.3 258 34.1
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.9e-13 81.3 192 34.4
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.9e-13 81.3 332 30.1
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.8e-13 80.9 366 29.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.0e-13 80.5 274 29.9
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 5.0e-13 80.5 214 35.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.6e-13 79.7 274 29.6
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 8.6e-13 79.7 374 29.9
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.1e-12 79.3 241 34.0
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.1e-12 79.3 404 28.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-12 79.0 320 31.9
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.5e-12 79.0 320 31.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-12 79.0 287 31.7
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 3.3e-12 77.8 283 31.1
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 5.6e-12 77.0 219 35.2
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 7.3e-12 76.6 139 41.7
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.2e-11 75.9 342 31.0
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.6e-11 75.5 145 43.4
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.6e-11 74.3 342 28.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.7e-11 73.9 725 26.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.7e-11 73.9 251 31.5
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.7e-11 73.9 251 31.5
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.0e-10 72.8 229 31.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.0e-10 71.2 122 37.7
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 4.0e-10 70.9 266 30.5
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.2e-10 70.5 341 28.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 6.8e-10 70.1 272 32.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.5e-09 68.9 271 31.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 7.5e-09 66.6 286 27.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 1.3e-08 65.9 86 43.0
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.7e-08 65.5 221 31.2
RcHm_v2.0_Chr4g0397811 Rosa chinensis HOM05D012506 ORTHO05D003557 1.7e-08 65.5 72 59.7
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 3.7e-08 64.3 315 27.9
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 8.3e-08 63.2 340 27.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 8.3e-08 63.2 310 30.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.1e-07 62.8 271 31.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.1e-07 62.8 266 27.4
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.8e-07 62.0 771 26.1
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 3.2e-07 61.2 221 30.8
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.2e-07 61.2 250 33.2
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 3.2e-07 61.2 44 68.2
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 5.4e-07 60.5 697 23.4
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 9.2e-07 59.7 276 30.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 9.2e-07 59.7 39 71.8
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 9.2e-07 59.7 168 32.7
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.2e-06 59.3 291 29.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.0e-06 58.5 46 60.9
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.0e-06 58.5 103 39.8
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 3.5e-06 57.8 33 78.8
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 4.6e-06 57.4 328 28.7
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 7.8e-06 56.6 238 28.6


User provided reference genes

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