Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 9.0e-159 563.5 284 100.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-155 552.7 293 96.6
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 5.1e-154 547.7 288 96.9
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.6e-152 542.7 288 96.2
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.2e-152 540.8 288 95.8
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 3.6e-139 498.4 287 89.9
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.6e-123 446.4 301 77.1
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-117 426.8 301 73.8
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 4.2e-116 421.8 301 73.4
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 4.7e-99 365.2 299 66.6
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 2.2e-96 356.3 307 64.8
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.1e-95 352.1 304 63.5
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 5.4e-95 351.7 322 61.2
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 4.6e-94 348.6 315 61.9
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.7e-93 346.7 303 62.4
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 3.9e-93 345.5 314 61.8
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 6.6e-93 344.7 314 61.8
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.6e-93 344.4 319 60.8
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 1.9e-92 343.2 312 62.5
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 2.5e-92 342.8 301 63.1
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 4.3e-92 342.0 312 60.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 5.6e-92 341.7 311 60.1
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 9.5e-92 340.9 219 78.5
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.2e-91 340.5 307 62.2
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.2e-91 340.5 314 60.2
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.1e-91 339.7 316 59.2
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 2.8e-91 339.3 315 61.6
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 3.6e-91 339.0 290 64.5
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 4.7e-91 338.6 312 61.5
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 5.2e-90 335.1 314 62.4
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.5e-89 333.6 218 77.1
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 1.5e-89 333.6 296 63.5
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.0e-89 333.2 313 59.4
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 5.8e-89 331.6 287 62.4
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 9.8e-89 330.9 243 68.7
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.2e-88 329.7 316 57.9
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 8.3e-88 327.8 242 68.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.1e-87 327.4 313 59.7
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 1.9e-87 326.6 258 65.5
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.4e-87 326.2 307 60.3
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.2e-87 325.9 248 66.9
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 5.4e-87 325.1 319 57.4
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.0e-87 324.7 300 60.0
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 9.2e-87 324.3 309 59.5
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 9.2e-87 324.3 220 74.1
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.2e-86 323.9 303 58.7
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.6e-86 323.6 309 58.9
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 3.5e-86 322.4 297 59.9
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 6.0e-86 321.6 310 57.1
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 6.0e-86 321.6 309 57.9
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.3e-85 320.5 313 57.8
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.3e-85 320.5 306 59.2
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.9e-85 318.9 300 60.0
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 3.9e-85 318.9 301 59.8
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.6e-85 318.2 324 58.0
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 6.6e-85 318.2 299 57.9
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 6.6e-85 318.2 307 58.6
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 8.6e-85 317.8 300 59.3
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.1e-84 317.4 275 60.7
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.5e-84 317.0 311 57.9
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.5e-84 317.0 305 59.0
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 2.5e-84 316.2 334 55.4
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.3e-84 315.5 219 74.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 7.3e-84 314.7 222 70.3
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 9.5e-84 314.3 315 56.8
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.2e-83 313.9 306 57.8
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.6e-83 313.5 290 59.3
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.1e-83 313.2 302 59.6
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 2.8e-83 312.8 296 58.4
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 6.2e-83 311.6 303 57.8
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 6.2e-83 311.6 201 77.6
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 6.2e-83 311.6 339 54.6
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 8.1e-83 311.2 295 58.3
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 8.1e-83 311.2 295 58.3
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.1e-82 310.8 324 56.2
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.1e-82 310.8 290 60.3
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.1e-82 310.8 311 55.3
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-82 310.1 303 59.1
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-82 310.1 301 57.8
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.3e-82 309.7 218 72.0
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 6.8e-82 308.1 310 57.4
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.8e-82 308.1 220 69.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.2e-81 307.4 295 58.6
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 1.5e-81 307.0 220 69.1
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 1.5e-81 307.0 289 58.8
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.5e-81 307.0 290 59.3
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 5.8e-81 305.1 301 57.1
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 7.5e-81 304.7 219 69.9
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 7.5e-81 304.7 315 55.2
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 9.8e-81 304.3 216 70.4
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.2e-80 303.1 279 61.3
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.7e-80 302.4 218 72.0
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.4e-79 300.4 237 64.1
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.9e-79 300.1 229 65.9
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 3.2e-79 299.3 243 65.0
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 7.1e-79 298.1 211 70.6
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.7e-78 296.2 303 56.1
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 6.0e-78 295.0 297 57.2
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.0e-77 294.3 297 57.2
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.7e-77 293.5 321 54.2
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 3.0e-77 292.7 224 66.5
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 6.6e-77 291.6 218 68.8
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 4.3e-76 288.9 236 65.7
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.2e-75 287.3 250 58.4
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 3.6e-75 285.8 244 58.2
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 5.2e-74 282.0 293 53.9
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.7e-72 276.9 313 54.0
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.9e-72 276.2 289 55.7
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.7e-69 266.9 315 51.7
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 3.0e-69 266.2 249 55.0
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.5e-68 263.8 289 54.0
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 7.6e-65 251.5 229 59.4
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.3e-64 250.8 206 56.8
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 2.3e-61 240.0 210 55.2
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 2.4e-58 229.9 225 57.3
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 6.9e-58 228.4 234 49.6
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.3e-56 224.2 202 58.4
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 6.4e-56 221.9 194 63.4
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 9.0e-50 201.4 192 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.4e-42 177.6 168 54.2
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 6.7e-37 158.7 110 72.7
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.8e-35 153.3 153 58.2
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.4e-34 151.0 161 48.4
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.2e-33 147.9 145 54.5
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-32 144.8 121 63.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.9e-29 132.9 105 60.0
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 5.1e-29 132.5 207 38.2
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-26 124.8 70 81.4
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-25 120.6 70 80.0
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 2.6e-25 120.2 68 80.9
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 9.4e-23 111.7 150 36.7
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-18 98.2 64 71.9
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 2.4e-18 97.1 95 56.8
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 9.1e-18 95.1 135 48.1
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.2e-17 94.7 198 28.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 2.7e-14 83.6 45 82.2
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-12 78.2 130 44.6
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 7.0e-10 68.9 159 34.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-08 64.7 37 83.8
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 1.1e-07 61.6 69 49.3
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 1.5e-07 61.2 35 82.9


User provided reference genes

Program Settings