Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 1.0e-91 340.1 183 100.0
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 3.4e-66 255.4 182 81.9
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 6.0e-55 218.0 122 97.5
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 4.9e-49 198.4 122 76.2
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 6.0e-47 191.4 181 57.5
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 3.3e-37 159.1 121 74.4
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 1.9e-32 143.3 117 65.8
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 7.9e-31 137.9 112 67.0
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 1.5e-29 133.7 135 63.7
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 1.9e-29 133.3 110 66.4
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 2.5e-29 132.9 126 65.1
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 3.3e-29 132.5 115 64.3
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 3.3e-29 132.5 114 65.8
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 1.3e-28 130.6 115 66.1
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 1.6e-28 130.2 118 62.7
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 2.1e-28 129.8 127 60.6
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 2.1e-28 129.8 107 54.2
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 4.8e-28 128.6 118 61.0
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 6.2e-28 128.3 120 61.7
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 6.2e-28 128.3 122 59.8
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 8.1e-28 127.9 123 57.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.8e-27 126.7 95 57.9
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 1.8e-27 126.7 123 56.9
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 3.1e-27 125.9 137 51.8
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 3.1e-27 125.9 129 48.1
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 9.0e-27 124.4 113 64.6
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 9.0e-27 124.4 113 50.4
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 1.2e-26 124.0 112 58.9
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.5e-26 123.6 122 63.9
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 2.0e-26 123.2 141 54.6
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 2.0e-26 123.2 123 60.2
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 7.6e-26 121.3 116 51.7
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 9.9e-26 120.9 123 47.2
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 2.2e-25 119.8 107 51.4
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 6.4e-25 118.2 122 46.7
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 6.4e-25 118.2 96 54.2
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 8.4e-25 117.9 132 43.2
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 8.4e-25 117.9 118 60.2
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.4e-24 117.1 130 43.1
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 1.9e-24 116.7 118 48.3
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 2.4e-24 116.3 91 56.0
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 3.2e-24 115.9 130 42.3
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 4.2e-24 115.5 120 47.5
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 5.5e-24 115.2 122 43.4
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 2.1e-23 113.2 122 45.9
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 2.7e-23 112.8 105 49.5
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 2.7e-23 112.8 83 59.0
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 4.6e-23 112.1 103 50.5
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 1.0e-22 110.9 112 58.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.3e-22 110.5 93 54.8
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 1.8e-22 110.2 97 67.0
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 3.9e-22 109.0 116 54.3
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 2.5e-21 106.3 122 41.8
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 5.6e-21 105.1 110 45.5
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 5.6e-21 105.1 107 45.8
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 2.1e-20 103.2 120 55.8
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 3.7e-20 102.4 110 58.2
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 1.8e-19 100.1 59 62.7
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 1.8e-19 100.1 88 70.5
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 4.0e-19 99.0 80 56.2
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 6.9e-19 98.2 195 33.3
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 1.5e-18 97.1 107 58.9
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 1.5e-18 97.1 96 55.2
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 5.8e-18 95.1 65 58.5
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 5.8e-18 95.1 127 52.0
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 7.6e-18 94.7 123 52.8
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 1.3e-17 94.0 89 46.1
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 1.3e-17 94.0 100 46.0
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 4.2e-16 89.0 116 39.7
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 1.2e-15 87.4 74 48.6
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 2.7e-15 86.3 89 58.4
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 6.0e-15 85.1 120 46.7
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.3e-14 84.0 74 45.9
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 1.1e-13 80.9 114 50.0
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 1.9e-13 80.1 108 45.4
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 1.9e-13 80.1 56 53.6
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 2.5e-13 79.7 125 42.4
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 3.3e-13 79.3 90 55.6
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 5.7e-13 78.6 114 49.1
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 2.2e-12 76.6 122 43.4
Pp3c8_23020 Physcomitrium patens HOM05D007737 ORTHO05D009754 4.8e-12 75.5 56 50.0
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 8.2e-12 74.7 102 35.3
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 1.4e-11 73.9 122 44.3
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 5.3e-11 72.0 62 41.9
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 1.2e-10 70.9 108 42.6
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 3.4e-10 69.3 108 41.7
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 5.9e-10 68.6 89 51.7
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 2.9e-09 66.2 54 50.0
MELO3C022466.2 Cucumis melo HOM05D007737 ORTHO05D009754 1.8e-06 57.0 68 44.1


User provided reference genes

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