Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-241 837.4 425 100.0
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 3.4e-234 814.7 425 97.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.2e-229 797.7 419 96.7
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 4.0e-227 791.2 425 93.9
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-213 746.5 416 92.8
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-213 744.2 431 89.6
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.8e-210 733.4 424 85.8
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-209 732.6 424 86.1
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.4e-209 730.7 424 86.1
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 1.4e-208 729.6 425 84.5
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 4.1e-208 728.0 425 85.6
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 4.6e-207 724.5 425 84.2
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-206 721.5 438 83.3
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 5.6e-205 717.6 425 81.9
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 7.3e-205 717.2 422 82.2
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.1e-204 715.7 425 82.4
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 8.1e-204 713.8 424 82.5
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 3.1e-203 711.8 425 81.4
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 4.0e-203 711.4 425 81.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 6.8e-203 710.7 425 81.4
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 6.8e-203 710.7 425 81.9
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 8.9e-203 710.3 425 80.9
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.2e-202 709.9 425 81.6
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 2.6e-202 708.8 425 80.9
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 4.4e-202 708.0 425 81.9
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 5.8e-202 707.6 425 81.6
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 9.9e-202 706.8 425 81.4
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.3e-201 706.4 425 80.2
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 2.2e-201 705.7 425 79.5
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.2e-201 705.7 425 81.2
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 2.9e-201 705.3 425 80.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 2.9e-201 705.3 425 80.2
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.7e-201 704.9 425 81.2
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 4.9e-201 704.5 425 80.7
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 3.2e-200 701.8 425 80.5
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.1e-200 700.7 422 80.1
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 79.5
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 1.6e-199 699.5 425 79.3
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 2.1e-199 699.1 422 80.1
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 2.1e-199 699.1 421 80.3
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.7e-199 698.7 413 87.9
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.7e-199 698.7 425 79.5
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 2.7e-199 698.7 425 79.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 3.5e-199 698.4 425 79.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 6.0e-199 697.6 425 79.1
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 1.7e-198 696.0 425 79.8
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.7e-198 696.0 425 78.4
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 8.6e-198 693.7 425 79.8
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 1.9e-197 692.6 421 79.6
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 2.5e-197 692.2 425 79.1
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 3.3e-197 691.8 425 78.4
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 4.3e-197 691.4 425 78.6
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 5.6e-197 691.0 417 81.1
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 4.7e-196 688.0 449 76.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 6.2e-196 687.6 422 80.1
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 8.1e-196 687.2 426 78.4
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 8.1e-196 687.2 415 81.4
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.4e-195 686.4 425 77.9
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 2.4e-195 685.6 425 78.8
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 5.2e-195 684.5 424 78.3
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.5e-194 682.9 425 78.1
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.5e-194 682.9 425 78.8
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.0e-194 682.6 426 77.7
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.0e-194 682.6 421 79.3
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 2.6e-194 682.2 425 78.4
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.6e-194 682.2 425 77.2
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 3.4e-194 681.8 425 78.1
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.4e-194 681.4 426 78.4
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 9.9e-194 680.2 425 77.2
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.3e-193 679.9 425 77.9
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.3e-193 679.9 425 77.9
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.7e-193 679.5 425 78.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.9e-193 678.7 425 78.1
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.9e-193 678.7 425 78.1
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 2.9e-193 678.7 425 78.4
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 6.4e-193 677.6 425 77.9
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 6.4e-193 677.6 425 77.9
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 6.4e-193 677.6 425 77.6
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.1e-192 676.8 438 76.7
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 1.9e-192 676.0 425 78.1
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.9e-192 676.0 425 78.4
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 7.1e-192 674.1 471 73.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 9.2e-192 673.7 420 78.3
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 9.2e-192 673.7 425 78.4
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.6e-191 672.9 425 76.7
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 2.7e-191 672.2 425 78.1
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.7e-191 672.2 425 77.6
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 7.8e-191 670.6 420 78.1
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 7.8e-191 670.6 424 76.4
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 3.9e-190 668.3 425 76.9
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 3.9e-190 668.3 425 77.9
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 2.5e-189 665.6 415 78.8
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 4.3e-189 664.8 425 76.0
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 4.7e-188 661.4 422 78.9
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 4.7e-188 661.4 424 76.2
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 9.0e-187 657.1 420 76.7
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.0e-186 656.0 422 74.4
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 9.9e-186 653.7 413 78.5
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 3.8e-185 651.7 422 74.2
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-184 649.8 412 79.4
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.4e-184 649.8 422 73.9
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.5e-183 645.2 406 79.8
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.9e-182 641.7 410 79.8
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 8.7e-182 640.6 422 73.2
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.5e-181 639.8 425 76.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 2.1e-180 636.0 425 73.6
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 2.6e-178 629.0 425 73.6
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.3e-177 626.7 425 72.7
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.2e-177 625.9 425 72.9
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 2.9e-177 625.5 425 73.4
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.1e-176 623.6 433 72.3
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 5.1e-174 614.8 423 71.6
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 3.3e-173 612.1 423 69.7
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.3e-173 612.1 416 73.6
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 4.3e-173 611.7 423 69.7
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 9.6e-173 610.5 423 70.4
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.5e-170 601.7 422 72.0
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.5e-170 601.7 417 71.9
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.7e-169 599.7 413 73.4
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.4e-169 597.8 413 73.1
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 8.4e-169 597.4 611 54.0
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 5.5e-168 594.7 442 67.6
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.5e-167 592.0 424 70.0
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 4.6e-167 591.7 401 73.3
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.0e-167 591.3 475 65.5
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 1.3e-166 590.1 425 67.8
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 5.1e-166 588.2 364 77.7
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 7.4e-165 584.3 360 81.7
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.5e-162 575.1 353 77.1
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.1e-160 567.8 407 72.0
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 5.1e-158 561.6 410 68.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 5.7e-157 558.1 343 79.0
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 7.4e-157 557.8 347 77.8
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 1.3e-156 557.0 340 80.0
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.8e-156 555.8 415 64.1
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 3.4e-154 548.9 430 64.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.2e-152 541.2 419 69.7
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.0e-150 537.3 431 62.9
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 1.1e-147 527.3 415 64.8
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.2e-140 503.1 423 59.3
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.8e-139 500.0 312 77.9
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.9e-136 490.0 303 78.9
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 3.0e-126 456.1 442 56.3
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.6e-125 453.0 435 54.9
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.7e-124 449.1 281 77.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.8e-123 446.8 286 75.5
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 5.2e-110 402.1 430 49.5
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 2.8e-108 396.4 237 81.4
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 5.6e-104 382.1 250 73.6
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.2e-95 354.4 436 45.4
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.8e-86 323.9 465 41.5
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 4.6e-82 309.3 410 42.0
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.1e-78 298.1 171 83.0
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.4e-78 297.7 199 74.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 9.9e-69 265.0 239 58.2
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 2.4e-67 260.4 165 73.3
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.6e-66 257.7 157 74.5
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 5.3e-62 242.7 173 68.8
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 2.9e-52 210.3 161 65.8
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.2e-51 206.8 253 48.6
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 3.5e-50 203.4 158 66.5
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 8.2e-31 139.0 95 74.7
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 1.3e-28 131.7 86 74.4
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 7.9e-26 122.5 86 67.4
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.4e-25 121.7 126 55.6
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 2.6e-24 117.5 235 32.8
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.2e-23 114.4 72 76.4
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 6.5e-20 102.8 55 89.1
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.1e-19 102.1 58 81.0
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 5.2e-17 93.2 129 45.0
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 3.3e-16 90.5 97 52.6
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 9.7e-16 89.0 230 31.3
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 5.3e-14 83.2 55 65.5
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 2.0e-13 81.3 168 35.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.5e-11 75.1 48 75.0
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 3.4e-08 63.9 38 81.6
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 3.4e-08 63.9 71 45.1
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 9.7e-08 62.4 43 60.5
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.3e-07 62.0 47 57.4
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 2.2e-07 61.2 47 59.6
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 8.3e-07 59.3 32 68.8
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 1.8e-06 58.2 42 54.8


User provided reference genes

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