Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1418.7 726 100.0
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 0.0e+00 1319.7 722 94.2
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1302.3 726 92.7
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 0.0e+00 1289.2 722 92.5
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.5e-277 957.6 532 93.6
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 6.6e-222 774.6 710 62.8
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.8e-220 769.2 754 59.0
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.0e-154 550.4 762 47.1
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.3e-148 528.9 386 76.2
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 7.7e-146 521.9 756 46.3
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 5.5e-144 515.8 771 45.4
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 5.7e-141 505.8 783 45.7
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.1e-136 491.5 735 45.2
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 2.5e-136 490.3 761 43.9
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 4.2e-136 489.6 711 45.7
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 6.7e-134 482.3 554 51.4
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 6.7e-134 482.3 720 44.9
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 4.8e-132 476.1 758 44.6
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 4.1e-131 473.0 760 43.6
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 9.1e-131 471.9 760 43.4
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.2e-130 471.5 308 85.1
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 2.1e-127 460.7 819 42.4
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 4.7e-127 459.5 752 42.6
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 5.7e-125 452.6 746 43.6
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 2.9e-121 440.3 713 43.9
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.2e-120 436.8 723 44.0
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 9.5e-120 435.3 752 41.5
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 1.2e-119 434.9 750 42.1
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 3.0e-118 430.3 740 41.1
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 7.5e-117 425.6 686 42.1
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.7e-116 423.3 754 41.6
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.2e-114 418.3 744 41.1
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 1.6e-114 417.9 653 43.0
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 4.7e-111 406.4 673 41.3
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 4.0e-110 403.3 748 40.4
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 6.4e-108 396.0 752 37.8
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 1.4e-107 394.8 763 39.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.8e-107 394.4 700 40.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 5.4e-107 392.9 707 40.6
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 1.2e-106 391.7 697 39.0
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.7e-105 387.9 672 41.2
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.1e-104 385.2 749 38.9
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.8e-103 380.6 715 41.5
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.8e-103 380.6 720 40.7
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 3.1e-102 377.1 695 38.7
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 6.8e-102 375.9 705 40.3
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.5e-101 374.8 716 40.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 4.4e-101 373.2 725 40.0
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 7.5e-101 372.5 724 39.8
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 2.9e-100 370.5 709 40.2
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 8.3e-100 369.0 727 38.8
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 1.9e-99 367.9 617 42.6
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 2.4e-99 367.5 758 39.3
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.2e-98 365.2 708 40.0
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 1.6e-98 364.8 736 37.8
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.0e-98 364.4 765 36.9
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 3.5e-98 363.6 507 48.3
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 4.6e-98 363.2 703 38.1
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.3e-97 361.7 805 37.9
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 2.1e-95 354.4 707 38.8
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 2.8e-95 354.0 565 44.8
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 6.2e-95 352.8 720 39.4
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 6.2e-95 352.8 573 42.6
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.3e-92 345.1 703 38.0
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 1.7e-92 344.7 478 41.8
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.9e-92 344.0 727 38.9
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.1e-91 342.0 703 37.7
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.1e-91 340.1 718 36.6
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 9.2e-91 339.0 714 36.8
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.6e-90 338.2 744 36.7
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.1e-90 337.8 743 37.7
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 3.5e-90 337.0 717 37.2
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.0e-89 335.5 643 39.0
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.1e-88 332.0 706 36.3
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 9.5e-88 328.9 780 36.5
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.6e-87 328.2 613 39.2
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 4.7e-87 326.6 716 36.6
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.1e-86 325.5 715 35.8
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.2e-85 322.0 700 36.6
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.7e-84 318.2 677 37.1
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 8.4e-84 315.8 379 49.1
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.2e-82 312.0 889 34.6
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.6e-82 311.6 670 39.7
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.7e-81 308.1 533 42.2
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.7e-81 308.1 702 35.8
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 5.1e-81 306.6 515 43.5
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 4.3e-80 303.5 461 43.4
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 4.7e-79 300.1 447 43.4
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.7e-74 284.3 449 43.2
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.9e-73 280.4 305 60.0
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 2.7e-66 257.7 230 60.0
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 8.1e-63 246.1 367 41.1
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 1.4e-54 218.8 369 46.6
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.8e-54 218.4 619 31.0
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.1e-54 217.6 534 38.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 4.2e-51 207.2 481 35.1
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.3e-49 202.2 345 38.0
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 2.3e-49 201.4 683 28.4
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.0e-49 201.1 354 39.3
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 4.3e-48 197.2 581 29.9
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 1.3e-47 195.7 447 37.6
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 4.1e-46 190.7 370 39.2
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.3e-44 185.7 438 36.3
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 2.9e-44 184.5 328 44.5
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 2.7e-42 177.9 180 60.0
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.7e-39 168.7 791 26.3
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.4e-38 165.6 207 44.4
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 4.7e-34 150.6 350 39.1
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.2e-28 131.7 113 66.4
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 2.9e-28 131.3 358 32.1
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 4.2e-27 127.5 256 35.9
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 3.6e-26 124.4 354 36.7
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 3.7e-23 114.4 80 72.5
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.1e-22 112.8 271 38.4
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.0e-20 106.3 300 30.7
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.2e-16 92.8 50 94.0
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 2.8e-15 88.2 308 32.1
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 4.5e-13 80.9 109 45.0
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 7.2e-11 73.6 240 30.8
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 4.7e-10 70.9 112 40.2
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.3e-09 68.6 48 77.1
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.5e-08 65.9 40 82.5
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.6e-08 65.1 222 30.6


User provided reference genes

Program Settings