Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4716 Fragaria x ananassa HOM05D000349 ORTHO05D035741 3.3e-127 458.4 233 100.0
FAN05G2953 Fragaria x ananassa HOM05D016386 ORTHO05D035741 1.3e-22 110.9 190 38.4
CAN.G61.36 Capsicum annuum HOM05D000349 ORTHO05D001782 2.4e-16 90.1 118 45.8
MBI01_g01234_MAGBIO Magnolia biondii HOM05D000349 ORTHO05D001782 1.6e-15 87.4 118 48.3
SalBow1G6919 Salvia bowleyana HOM05D000349 ORTHO05D001782 1.6e-15 87.4 118 45.8
Cpa.g.sc14.46 Carica papaya HOM05D000349 ORTHO05D001782 2.0e-15 87.0 122 45.1
PGR083G1519 Punica granatum HOM05D000349 ORTHO05D001782 2.0e-15 87.0 133 44.4
RcHm_v2.0_Chr2g0169241 Rosa chinensis HOM05D000349 ORTHO05D001782 2.0e-15 87.0 118 44.9
Ciclev10010963m.g Citrus clementina HOM05D000349 ORTHO05D001782 3.5e-15 86.3 122 45.1
FvH4_6g49380 Fragaria vesca HOM05D000349 ORTHO05D001782 3.5e-15 86.3 118 44.9
FAN02G2291 Fragaria x ananassa HOM05D000349 ORTHO05D001782 3.5e-15 86.3 118 44.9
FAN05G2522 Fragaria x ananassa HOM05D000349 ORTHO05D001782 3.5e-15 86.3 118 44.9
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 3.5e-15 86.3 118 44.9
Manes.15G175400 Manihot esculenta HOM05D000349 ORTHO05D001782 3.5e-15 86.3 122 45.1
Nitab4.5_0003226g0010 Nicotiana tabacum HOM05D000349 ORTHO05D001782 4.5e-15 85.9 118 44.9
SHI24098 Sapria himalayana HOM05D000349 ORTHO05D001782 4.5e-15 85.9 122 44.3
arahy.Tifrunner.gnm1.ann1.EK04TZ Arachis hypogaea HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
arahy.Tifrunner.gnm1.ann1.F3F8HA Arachis hypogaea HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
Lj7A402T46 Lonicera japonica HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
Nitab4.5_0000002g0490 Nicotiana tabacum HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
Peaxi162Scf00700g00725 Petunia axillaris HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
Solyc03g058960.1 Solanum lycopersicum HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
Sopen03g012920 Solanum pennellii HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
SGA_v2.0_scaffold224G42952 Striga asiatica HOM05D000349 ORTHO05D001782 5.9e-15 85.5 118 44.9
CSS0004801 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 7.7e-15 85.1 118 44.1
CSS0006610 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 7.7e-15 85.1 118 44.1
CANSAT64G1270 Cannabis sativa HOM05D000349 ORTHO05D001782 7.7e-15 85.1 118 44.1
Dinv33714 Davidia involucrata HOM05D000349 ORTHO05D001782 7.7e-15 85.1 118 44.1
Dinv34993 Davidia involucrata HOM05D000349 ORTHO05D001782 7.7e-15 85.1 118 44.9
Potri.017G076400 Populus trichocarpa HOM05D000349 ORTHO05D001782 7.7e-15 85.1 122 44.3
Sabra17G0068200 Salix brachista HOM05D000349 ORTHO05D001782 7.7e-15 85.1 122 44.3
ECA232G0316 Erigeron canadensis HOM05D000349 ORTHO05D001782 1.0e-14 84.7 122 44.3
ECA238G2719 Erigeron canadensis HOM05D000349 ORTHO05D001782 1.0e-14 84.7 122 44.3
Glyma.18G255000 Glycine max HOM05D000349 ORTHO05D001782 1.0e-14 84.7 118 44.9
Lsat_1_v5_gn_2_88460 Lactuca sativa HOM05D000349 ORTHO05D001782 1.0e-14 84.7 122 44.3
Lsat_1_v5_gn_4_179941 Lactuca sativa HOM05D000349 ORTHO05D001782 1.0e-14 84.7 122 44.3
VMungo1383G3294 Vigna mungo HOM05D000349 ORTHO05D001782 1.0e-14 84.7 118 44.9
Nn3g17106 Nelumbo nucifera HOM05D000349 ORTHO05D001782 1.3e-14 84.3 136 40.4
Potri.004G129900 Populus trichocarpa HOM05D000349 ORTHO05D001782 1.3e-14 84.3 122 44.3
Prupe.3G272600 Prunus persica HOM05D000349 ORTHO05D001782 1.3e-14 84.3 118 44.1
Actinidia06066 Actinidia chinensis HOM05D000349 ORTHO05D001782 1.7e-14 84.0 118 44.1
Cc07_g02940 Coffea canephora HOM05D000349 ORTHO05D001782 1.7e-14 84.0 118 44.1
Atru.chr8.2478 Acer truncatum HOM05D000349 ORTHO05D001782 2.2e-14 83.6 122 42.6
Migut.H00886 Erythranthe guttata HOM05D000349 ORTHO05D001782 2.2e-14 83.6 118 44.9
HPP92_019652 Vanilla planifolia HOM05D000349 ORTHO05D001782 2.2e-14 83.6 136 39.7
Aa31LG11G14480 Aethionema arabicum HOM05D000349 ORTHO05D001782 2.9e-14 83.2 118 44.1
Phvul.008G044100 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 2.9e-14 83.2 118 44.1
TAR629G2859 Trochodendron aralioides HOM05D000349 ORTHO05D001782 2.9e-14 83.2 118 44.1
unitig_32.g11779 Utricularia gibba HOM05D000349 ORTHO05D001782 2.9e-14 83.2 118 43.2
Actinidia36030 Actinidia chinensis HOM05D000349 ORTHO05D001782 3.8e-14 82.8 118 43.2
AL3G10930 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 3.8e-14 82.8 136 40.4
AT3G01310 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 3.8e-14 82.8 136 40.4
Carub.0003s0084 Capsella rubella HOM05D000349 ORTHO05D001782 3.8e-14 82.8 136 40.4
CDE06G1135 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 3.8e-14 82.8 118 44.1
ATR0709G022 Amborella trichopoda HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 43.2
AL6G25890 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
AT5G15070 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
BcaB01g05086 Brassica carinata HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
A03p06920 Brassica napus HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
C03p07910 Brassica napus HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
BolC3t13288H Brassica oleracea HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
BraA03t10013Z Brassica rapa HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
Carub.0006s1324 Capsella rubella HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
CARHR198250 Cardamine hirsuta HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
Eucgr.I01909 Eucalyptus grandis HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 43.2
Thhalv10012536m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
Lj1g0013791 Lotus japonicus HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 43.2
Medtr7g009060 Medicago truncatula HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 43.2
Psat3g194960 Pisum sativum HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 43.2
Sp3g00780 Schrenkiella parvula HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
Sp6g29000 Schrenkiella parvula HOM05D000349 ORTHO05D001782 5.0e-14 82.4 118 44.1
BcaB04g21424 Brassica carinata HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
BcaC09g47646 Brassica carinata HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
BNapus_Darmor_BZH_scaffold_119p00140 Brassica napus HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
BNapus_Darmor_BZH_scaffold_97p00290 Brassica napus HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
BolC1t05950H Brassica oleracea HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
BraA01t04654Z Brassica rapa HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 39.7
Ca_04097_v3 Cicer arietinum L. HOM05D000349 ORTHO05D001782 6.5e-14 82.0 118 43.2
Thhalv10019952m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 6.5e-14 82.0 136 40.4
HanXRQChr02g0056461 Helianthus annuus HOM05D000349 ORTHO05D001782 6.5e-14 82.0 122 42.6
CSS0003275 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
CSS0031648 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
CAN.G206.106 Capsicum annuum HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
Cfa007504 Carpinus fangiana HOM05D000349 ORTHO05D001782 8.5e-14 81.6 136 39.0
CiPaw.03G030700 Carya illinoinensis HOM05D000349 ORTHO05D001782 8.5e-14 81.6 136 39.0
Haze_14589 Corylus avellana HOM05D000349 ORTHO05D001782 8.5e-14 81.6 136 39.0
DCAR_011167 Daucus carota HOM05D000349 ORTHO05D001782 8.5e-14 81.6 122 43.4
Eucgr.J02137 Eucalyptus grandis HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 43.2
Glyma.09G241100 Glycine max HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
Solyc02g087620.3 Solanum lycopersicum HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
Sopen02g032370 Solanum pennellii HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
PGSC0003DMG403001309 Solanum tuberosum HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 44.1
GSVIVG01032598001 Vitis vinifera HOM05D000349 ORTHO05D001782 8.5e-14 81.6 118 42.4
BcaB08g36931 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
BcaC04g18992 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
A10p23790 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
C09p62100 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
BolC9t59048H Brassica oleracea HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
BraA10t44442Z Brassica rapa HOM05D000349 ORTHO05D001782 1.1e-13 81.3 118 43.2
RhsimUnG0054600 Rhododendron simsii HOM05D000349 ORTHO05D001782 1.1e-13 81.3 136 39.7
CARHR075720 Cardamine hirsuta HOM05D000349 ORTHO05D001782 1.5e-13 80.9 136 39.0
CDE02G3185 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 1.5e-13 80.9 117 43.6
HanXRQChr14g0449361 Helianthus annuus HOM05D000349 ORTHO05D001782 1.5e-13 80.9 118 44.1
Lalb_Chr02g0159481 Lupinus albus HOM05D000349 ORTHO05D001782 1.5e-13 80.9 118 44.9
Lalb_Chr21g0318991 Lupinus albus HOM05D000349 ORTHO05D001782 1.5e-13 80.9 118 44.9
Phvul.004G025600 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 1.5e-13 80.9 118 44.1
Hund15653 Selenicereus undatus HOM05D000349 ORTHO05D001782 1.5e-13 80.9 118 42.4
Aqoxy3G00794 Aquilegia oxysepala HOM05D000349 ORTHO05D001782 1.9e-13 80.5 118 42.4
Lj2g0003395 Lotus japonicus HOM05D000349 ORTHO05D001782 1.9e-13 80.5 118 44.1
Lalb_Chr06g0175521 Lupinus albus HOM05D000349 ORTHO05D001782 1.9e-13 80.5 136 41.2
PSO478G0063 Papaver somniferum HOM05D000349 ORTHO05D001782 1.9e-13 80.5 118 41.5
PGR142G2597 Punica granatum HOM05D000349 ORTHO05D001782 1.9e-13 80.5 118 43.2
PGR142G4016 Punica granatum HOM05D000349 ORTHO05D001782 1.9e-13 80.5 118 43.2
TWI60G0717 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 1.9e-13 80.5 122 43.4
THA.LOC104822374 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 2.5e-13 80.1 118 43.2
Zm00001eb053420 Zea mays HOM05D000349 ORTHO05D001782 2.5e-13 80.1 118 43.2
Aa31LG5G12310 Aethionema arabicum HOM05D000349 ORTHO05D001782 3.2e-13 79.7 136 39.0
MSTRG.15490 Avicennia marina HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 41.5
ClCG09G018430 Citrullus lanatus HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 42.4
MELO3C021971.2 Cucumis melo HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 42.4
Gohir.A09G020400 Gossypium hirsutum HOM05D000349 ORTHO05D001782 3.2e-13 79.7 122 41.8
Gohir.D09G020000 Gossypium hirsutum HOM05D000349 ORTHO05D001782 3.2e-13 79.7 122 41.8
Gorai.006G023400 Gossypium raimondii HOM05D000349 ORTHO05D001782 3.2e-13 79.7 122 41.8
Sed0019591 Sechium edule HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 42.4
unitig_748.g8619 Utricularia gibba HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 43.2
VMungo0464G1194 Vigna mungo HOM05D000349 ORTHO05D001782 3.2e-13 79.7 118 43.2
EL10Ac2g02930 Beta vulgaris HOM05D000349 ORTHO05D001782 4.2e-13 79.3 137 38.7
AUR62031653 Chenopodium quinoa HOM05D000349 ORTHO05D001782 4.2e-13 79.3 136 39.0
TWI32G0660 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 4.2e-13 79.3 122 42.6
BcaC01g04519 Brassica carinata HOM05D000349 ORTHO05D001782 5.5e-13 79.0 136 38.2
A03p32580 Brassica napus HOM05D000349 ORTHO05D001782 5.5e-13 79.0 136 38.2
C03p39660 Brassica napus HOM05D000349 ORTHO05D001782 5.5e-13 79.0 136 38.2
BolC3t16231H Brassica oleracea HOM05D000349 ORTHO05D001782 5.5e-13 79.0 136 38.2
BraA03t12427Z Brassica rapa HOM05D000349 ORTHO05D001782 5.5e-13 79.0 136 38.2
HanXRQChr09g0265651 Helianthus annuus HOM05D000349 ORTHO05D001782 5.5e-13 79.0 118 44.1
Medtr6g011290 Medicago truncatula HOM05D000349 ORTHO05D001782 5.5e-13 79.0 122 42.6
Nn4g23012 Nelumbo nucifera HOM05D000349 ORTHO05D001782 5.5e-13 79.0 118 42.4
Os03g0689100 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 5.5e-13 79.0 118 42.4
TPR.G4268 Trifolium pratense HOM05D000349 ORTHO05D001782 5.5e-13 79.0 118 42.4
Gorai.012G055700 Gossypium raimondii HOM05D000349 ORTHO05D001782 7.2e-13 78.6 122 42.6
THA.LOC104821051 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 7.2e-13 78.6 118 43.2
TAR622G1370 Trochodendron aralioides HOM05D000349 ORTHO05D001782 7.2e-13 78.6 118 42.4
Migut.K01337 Erythranthe guttata HOM05D000349 ORTHO05D001782 9.4e-13 78.2 118 42.4
Peaxi162Scf00129g00546 Petunia axillaris HOM05D000349 ORTHO05D001782 9.4e-13 78.2 118 42.4
arahy.Tifrunner.gnm1.ann1.1VPR90 Arachis hypogaea HOM05D000349 ORTHO05D001782 1.2e-12 77.8 118 42.4
arahy.Tifrunner.gnm1.ann1.5C5NI4 Arachis hypogaea HOM05D000349 ORTHO05D001782 1.2e-12 77.8 118 42.4
Duzib147G1141 Durio zibethinus HOM05D000349 ORTHO05D001782 1.2e-12 77.8 122 41.8
Glyma.19G019100 Glycine max HOM05D000349 ORTHO05D001782 1.2e-12 77.8 118 42.4
Sc10g0003860 Simmondsia chinensis HOM05D000349 ORTHO05D001782 1.2e-12 77.8 118 42.4
Thecc.04G073400 Theobroma cacao HOM05D000349 ORTHO05D001782 1.2e-12 77.8 122 42.6
COL.COLO4_25206 Corchorus olitorius HOM05D000349 ORTHO05D001782 1.6e-12 77.4 122 42.6
Nitab4.5_0000564g0370 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.6e-12 77.4 118 42.4
Nitab4.5_0002265g0230 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.6e-12 77.4 118 42.4
Psat1g076120 Pisum sativum HOM05D000349 ORTHO05D001782 1.6e-12 77.4 118 42.4
CiPaw.04G020400 Carya illinoinensis HOM05D000349 ORTHO05D001782 2.1e-12 77.0 136 41.2
MSTRG.3314 Avicennia marina HOM05D000349 ORTHO05D001782 2.7e-12 76.6 118 41.5
SMO164G0156 Selaginella moellendorffii HOM05D000349 ORTHO05D001782 3.6e-12 76.3 118 40.7
arahy.Tifrunner.gnm1.ann1.P37ZHI Arachis hypogaea HOM05D000349 ORTHO05D001782 4.7e-12 75.9 117 41.9
Glyma.13G065500 Glycine max HOM05D000349 ORTHO05D001782 4.7e-12 75.9 118 42.4
Gohir.A05G364500 Gossypium hirsutum HOM05D000349 ORTHO05D001782 6.1e-12 75.5 122 41.8
Gohir.D04G050300 Gossypium hirsutum HOM05D000349 ORTHO05D001782 8.0e-12 75.1 122 41.8
Pp3c3_34460 Physcomitrium patens HOM05D000349 ORTHO05D001782 1.0e-11 74.7 118 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3168 Anthoceros agrestis HOM05D000349 ORTHO05D001782 1.4e-11 74.3 118 40.7
Mapoly0013s0108 Marchantia polymorpha HOM05D000349 ORTHO05D001782 1.4e-11 74.3 118 40.7
Pp3c12_13560 Physcomitrium patens HOM05D000349 ORTHO05D001782 3.0e-11 73.2 118 39.8
MD17G1046500 Malus domestica HOM05D000349 ORTHO05D001782 6.7e-11 72.0 110 41.8
CBR_g24415 Chara braunii HOM05D000349 ORTHO05D001782 2.0e-10 70.5 118 40.7
PRCOL_00003213 Prasinoderma coloniale HOM05D000349 ORTHO05D001782 7.5e-10 68.6 118 39.0
Os01g0777700 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 9.7e-10 68.2 121 39.7
Cre03.g185500 Chlamydomonas reinhardtii HOM05D000349 ORTHO05D001782 1.1e-08 64.7 119 39.5
TPR.G4339 Trifolium pratense HOM05D000349 ORTHO05D001782 1.1e-08 64.7 150 36.7
vmacro05747 Vaccinium macrocarpon HOM05D000349 ORTHO05D001782 2.4e-08 63.5 32 84.4
FvH4_2g13611 Fragaria vesca HOM05D016386 ORTHO05D035741 3.1e-08 63.2 104 35.6
MCO07G464 Micromonas commoda HOM05D000349 ORTHO05D001782 4.1e-08 62.8 136 35.3
SEGI_22302 Sequoiadendron giganteum HOM05D000349 ORTHO05D001782 4.1e-08 62.8 31 83.9
CsaV3_5G037850 Cucumis sativus L. HOM05D000349 ORTHO05D001782 9.1e-08 61.6 32 81.2
Duzib187G1387 Durio zibethinus HOM05D000349 ORTHO05D001782 7.7e-07 58.5 32 78.1
HPP92_012222 Vanilla planifolia HOM05D000349 ORTHO05D001782 1.0e-06 58.2 72 51.4
Haze_26771 Corylus avellana HOM05D000349 ORTHO05D001782 5.0e-06 55.8 130 33.8
SGA_v2.0_scaffold205G41756 Striga asiatica HOM05D000349 ORTHO05D001782 6.5e-06 55.5 56 55.4


User provided reference genes

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