Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 6.1e-98 360.9 195 100.0
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 8.8e-97 357.1 195 98.5
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.0e-94 347.4 195 96.9
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.0e-89 332.0 229 83.4
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 5.5e-83 311.2 196 89.3
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.9e-63 245.7 186 76.9
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 3.5e-61 238.8 187 75.9
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 3.0e-60 235.7 191 73.3
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.3e-59 231.1 127 98.4
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 2.2e-55 219.5 186 69.9
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.6e-53 213.4 188 70.2
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 4.6e-53 211.8 187 70.6
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.0e-52 210.7 186 68.8
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 5.0e-52 208.4 181 69.1
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 1.2e-50 203.8 185 65.9
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 2.8e-50 202.6 186 66.7
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 4.7e-50 201.8 186 66.1
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 8.1e-50 201.1 186 67.2
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 8.1e-50 201.1 188 65.4
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 1.4e-49 200.3 189 67.2
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.0e-49 198.7 196 65.3
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.5e-48 196.8 185 63.2
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.0e-48 196.4 192 66.7
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 2.6e-48 196.1 190 64.2
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.4e-48 195.7 192 64.6
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 7.5e-48 194.5 192 65.1
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.3e-47 193.7 186 65.6
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 2.2e-47 193.0 186 63.4
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 2.2e-47 193.0 186 64.5
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.9e-47 191.8 169 66.3
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 8.3e-47 191.0 225 56.4
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.4e-46 190.3 182 64.3
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.9e-46 189.9 192 62.5
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 1.9e-46 189.9 184 61.4
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.4e-46 189.5 169 69.2
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 9.2e-46 187.6 189 65.6
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 9.2e-46 187.6 189 63.5
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 1.6e-45 186.8 195 63.1
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.6e-45 186.8 167 68.3
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 2.1e-45 186.4 190 65.3
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 2.1e-45 186.4 180 67.2
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 3.5e-45 185.7 184 61.4
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 4.6e-45 185.3 185 62.7
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.3e-44 183.0 176 64.8
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.3e-44 183.0 169 68.0
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 5.1e-44 181.8 167 65.3
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.1e-43 180.6 202 59.4
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.9e-43 179.9 166 66.9
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 5.6e-43 178.3 175 61.1
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 9.5e-43 177.6 190 59.5
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 9.5e-43 177.6 178 62.9
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 1.2e-42 177.2 193 60.1
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 4.7e-42 175.3 116 79.3
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 6.2e-42 174.9 188 56.9
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 6.2e-42 174.9 177 62.7
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 1.1e-41 174.1 186 59.7
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.4e-41 173.7 194 58.2
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 4.0e-41 172.2 123 76.4
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 4.0e-41 172.2 185 60.0
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 6.8e-41 171.4 189 58.7
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 8.9e-41 171.0 154 64.9
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 4.4e-40 168.7 189 58.7
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 9.9e-40 167.5 209 56.9
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 9.9e-40 167.5 185 57.3
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 2.2e-39 166.4 201 56.7
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 2.9e-39 166.0 192 58.9
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.4e-39 164.9 181 60.8
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 8.4e-39 164.5 159 61.6
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 1.1e-38 164.1 190 58.4
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 1.1e-38 164.1 190 58.4
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 1.1e-38 164.1 190 58.4
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 1.1e-38 164.1 158 62.0
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 3.2e-38 162.5 118 76.3
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 1.6e-37 160.2 195 55.9
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 6.0e-37 158.3 188 53.7
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 7.8e-37 157.9 151 61.6
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.0e-36 157.5 193 56.0
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 1.0e-36 157.5 183 53.0
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 1.3e-36 157.1 116 72.4
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 3.9e-36 155.6 193 54.4
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 6.6e-36 154.8 201 54.7
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 4.3e-35 152.1 173 55.5
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 5.6e-35 151.8 192 55.2
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 5.6e-35 151.8 164 56.7
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.2e-34 150.6 188 55.9
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 2.1e-34 149.8 187 54.0
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 2.8e-34 149.4 181 53.6
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 2.8e-34 149.4 191 56.5
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 8.1e-34 147.9 99 76.8
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 8.1e-34 147.9 188 54.3
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.4e-33 147.1 143 60.8
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 2.4e-33 146.4 85 87.1
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 1.5e-32 143.7 95 75.8
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.3e-31 140.6 179 54.2
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 2.7e-29 132.9 147 57.8
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.3e-28 129.8 149 53.7
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 3.0e-28 129.4 192 49.0
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.5e-27 127.1 192 48.4
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 4.3e-27 125.6 121 62.0
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 3.6e-26 122.5 155 55.5
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 6.2e-26 121.7 120 57.5
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 5.3e-25 118.6 151 48.3
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.6e-24 116.3 97 68.0
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 7.6e-24 114.8 122 57.4
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.4e-22 110.5 83 72.3
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-20 103.6 81 71.6
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-20 103.6 81 71.6
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 8.7e-20 101.3 107 62.6
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.1e-19 100.9 145 42.8
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 9.0e-17 91.3 94 55.3
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.2e-16 90.9 145 41.4
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 6.4e-15 85.1 80 60.0
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 9.3e-14 81.3 153 36.6
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 8.7e-12 74.7 88 51.1
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 1.4e-09 67.4 88 56.8
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 2.0e-08 63.5 60 48.3


User provided reference genes

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