Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4598 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.2e-130 468.0 232 100.0
FAN05G2597 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.0e-99 367.1 291 68.0
FvH4_6g51680 Fragaria vesca HOM05D002477 ORTHO05D001927 2.0e-92 342.8 181 93.4
FAN14G3449 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.9e-92 341.3 181 92.8
FAN14G4953 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.9e-92 341.3 181 92.8
FAN05G2298 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.9e-23 112.1 81 66.7
FvH4_6g40210 Fragaria vesca HOM05D002477 ORTHO05D001927 7.6e-23 111.7 81 66.7
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 3.8e-22 109.4 81 64.2
FAN09G2397 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.4e-21 107.5 151 45.0
FAN02G1061 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.8e-19 98.2 162 38.9
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 1.1e-16 91.3 176 31.2
Prupe.3G192500 Prunus persica HOM05D002477 ORTHO05D001927 3.8e-14 82.8 74 45.9
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 8.5e-14 81.6 92 42.4
CARHR001320 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.5e-13 80.1 174 29.3
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 2.5e-13 80.1 219 27.4
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 5.5e-13 79.0 114 37.7
MD09G1134000 Malus domestica HOM05D002477 ORTHO05D001927 7.2e-13 78.6 75 46.7
Haze_12569 Corylus avellana HOM05D002477 ORTHO05D001927 1.6e-12 77.4 132 35.6
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.6e-12 77.4 120 35.0
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 7.9e-12 75.1 201 26.4
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 7.9e-12 75.1 103 36.9
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 7.9e-12 75.1 155 33.5
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 1.0e-11 74.7 76 44.7
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.0e-11 74.7 77 40.3
AL1G11350 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 1.4e-11 74.3 204 26.0
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.8e-11 73.9 77 41.6
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.8e-11 73.9 77 41.6
SalBow5G2191 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.8e-11 73.9 190 28.4
Potri.002G005600 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.3e-11 73.6 95 43.2
PGR044G1376 Punica granatum HOM05D002477 ORTHO05D001927 2.3e-11 73.6 230 25.7
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 3.9e-11 72.8 208 26.0
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 5.1e-11 72.4 223 23.3
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.7e-11 72.0 141 33.3
Atru.chr6.3448 Acer truncatum HOM05D002477 ORTHO05D001927 8.8e-11 71.6 91 44.0
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 8.8e-11 71.6 290 23.8
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 8.8e-11 71.6 70 42.9
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 8.8e-11 71.6 276 25.7
Sabra02G0004000 Salix brachista HOM05D002477 ORTHO05D001927 1.1e-10 71.2 76 44.7
BcaC05g25588 Brassica carinata HOM05D002477 ORTHO05D001927 1.5e-10 70.9 233 25.8
C05p14440 Brassica napus HOM05D002477 ORTHO05D001927 1.5e-10 70.9 233 25.8
THA.LOC104808828 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.0e-10 70.5 81 38.3
THA.LOC104815384 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.0e-10 70.5 81 35.8
Thecc.01G201900 Theobroma cacao HOM05D002477 ORTHO05D001927 2.6e-10 70.1 165 30.3
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 4.4e-10 69.3 57 47.4
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 5.7e-10 68.9 77 37.7
Carub.0001s0106 Capsella rubella HOM05D002477 ORTHO05D001927 7.4e-10 68.6 199 29.6
AT1G01150 Arabidopsis thaliana HOM05D002477 ORTHO05D031469 9.7e-10 68.2 192 29.7
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 9.7e-10 68.2 117 33.3
BolC5t30170H Brassica oleracea HOM05D002477 ORTHO05D001927 1.3e-09 67.8 217 25.8
CANSAT64G2375 Cannabis sativa HOM05D002477 ORTHO05D001927 1.3e-09 67.8 73 47.9
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 1.7e-09 67.4 192 27.1
A06p12200 Brassica napus HOM05D002477 ORTHO05D001927 2.2e-09 67.0 218 25.2
BraA06t24388Z Brassica rapa HOM05D002477 ORTHO05D001927 2.2e-09 67.0 218 25.2
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.8e-09 66.6 69 40.6
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.8e-09 66.6 69 40.6
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.8e-09 66.6 69 40.6
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 2.8e-09 66.6 109 32.1
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 2.8e-09 66.6 64 46.9
BcaB02g06607 Brassica carinata HOM05D002477 ORTHO05D001927 4.8e-09 65.9 235 25.1
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 6.3e-09 65.5 135 28.9
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.1e-08 64.7 76 38.2
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.1e-08 64.7 239 22.6
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 1.4e-08 64.3 276 22.1
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.4e-08 64.3 76 34.2
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 1.8e-08 63.9 182 25.8
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 1.8e-08 63.9 256 21.5
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.8e-08 63.9 74 36.5
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 3.1e-08 63.2 162 29.6
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 3.1e-08 63.2 93 33.3
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 3.1e-08 63.2 67 40.3
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.1e-08 63.2 125 32.8
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 3.1e-08 63.2 119 34.5
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 4.1e-08 62.8 53 49.1
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 4.1e-08 62.8 67 35.8
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.1e-08 62.8 62 45.2
Gorai.007G163500 Gossypium raimondii HOM05D002477 ORTHO05D001927 4.1e-08 62.8 62 45.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 5.3e-08 62.4 246 22.4
QL02p026723 Quercus lobata HOM05D002477 ORTHO05D001927 7.0e-08 62.0 151 29.8
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 7.0e-08 62.0 123 27.6
QL93p2012_0041 Quercus lobata HOM05D002477 ORTHO05D001927 7.0e-08 62.0 151 30.5
RcHm_v2.0_Chr3g0447711 Rosa chinensis HOM05D002477 ORTHO05D001927 7.0e-08 62.0 52 51.9
THA.LOC104826636 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.0e-08 62.0 204 27.0
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 9.1e-08 61.6 55 43.6
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.1e-08 61.6 64 35.9
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.1e-08 61.6 64 35.9
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.1e-08 61.6 64 35.9
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 9.1e-08 61.6 64 35.9
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.2e-07 61.2 125 30.4
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 1.2e-07 61.2 99 30.3
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea HOM05D002477 ORTHO05D001927 1.5e-07 60.8 53 47.2
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 1.5e-07 60.8 125 30.4
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.0e-07 60.5 78 30.8
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 2.0e-07 60.5 67 40.3
C03p01300 Brassica napus HOM05D010575 ORTHO05D001927 2.0e-07 60.5 213 24.4
BolC3t12689H Brassica oleracea HOM05D010575 ORTHO05D001927 2.0e-07 60.5 213 24.4
CARHR209510 Cardamine hirsuta HOM05D010575 ORTHO05D001927 2.0e-07 60.5 110 35.5
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 2.0e-07 60.5 76 35.5
Sp5g00980 Schrenkiella parvula HOM05D010575 ORTHO05D001927 2.0e-07 60.5 107 32.7
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.6e-07 60.1 166 28.9
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.6e-07 60.1 81 29.6
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 3.4e-07 59.7 78 29.5
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 4.5e-07 59.3 64 37.5
A09p04380 Brassica napus HOM05D010575 ORTHO05D001927 4.5e-07 59.3 50 48.0
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.5e-07 59.3 164 28.0
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 4.5e-07 59.3 172 26.2
PGR042G2775 Punica granatum HOM05D002477 ORTHO05D001927 4.5e-07 59.3 64 37.5
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 4.5e-07 59.3 67 32.8
BcaB01g05861 Brassica carinata HOM05D010575 ORTHO05D001927 5.9e-07 58.9 214 23.8
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 5.9e-07 58.9 45 51.1
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 5.9e-07 58.9 128 33.6
Phvul.006G012311 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 5.9e-07 58.9 82 35.4
C07p39090 Brassica napus HOM05D001083 ORTHO05D001637 7.7e-07 58.5 43 53.5
BolC7t44427H Brassica oleracea HOM05D001083 ORTHO05D001637 7.7e-07 58.5 43 53.5
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 7.7e-07 58.5 80 28.8
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 7.7e-07 58.5 112 34.8
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 7.7e-07 58.5 78 33.3
AT4G12670 Arabidopsis thaliana HOM05D021191 ORTHO05D001927 1.0e-06 58.2 65 43.1
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.0e-06 58.2 42 50.0
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.0e-06 58.2 59 40.7
Carub.0007s3029 Capsella rubella HOM05D021191 ORTHO05D001927 1.3e-06 57.8 65 43.1
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.3e-06 57.8 74 31.1
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.3e-06 57.8 115 32.2
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 1.3e-06 57.8 147 27.9
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.3e-06 57.8 67 31.3
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 1.3e-06 57.8 63 38.1
AL9U12160 Arabidopsis lyrata HOM05D021191 ORTHO05D001927 1.7e-06 57.4 65 41.5
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.7e-06 57.4 71 35.2
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 1.7e-06 57.4 125 33.6
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 1.7e-06 57.4 64 31.2
PGSC0003DMG400031096 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.7e-06 57.4 112 33.9
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.7e-06 57.4 67 32.8
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 1.7e-06 57.4 90 34.4
BcaB04g19570 Brassica carinata HOM05D010575 ORTHO05D001927 2.2e-06 57.0 46 50.0
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.2e-06 57.0 64 32.8
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.2e-06 57.0 78 34.6
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 2.2e-06 57.0 57 43.9
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 2.2e-06 57.0 78 32.1
Sopen07g029480 Solanum pennellii HOM05D002477 ORTHO05D001927 2.2e-06 57.0 114 33.3
Aa31sc156G30 Aethionema arabicum HOM05D002477 ORTHO05D001927 2.9e-06 56.6 103 32.0
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 2.9e-06 56.6 107 30.8
Thhalv10003829m.g Eutrema salsugineum HOM05D021191 ORTHO05D001927 2.9e-06 56.6 150 28.0
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 2.9e-06 56.6 124 29.8
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 2.9e-06 56.6 103 29.1
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.9e-06 56.6 51 45.1
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 3.8e-06 56.2 78 33.3
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 3.8e-06 56.2 64 32.8
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 3.8e-06 56.2 78 32.1
AL6G13330 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 5.0e-06 55.8 92 37.0
BcaC04g23783 Brassica carinata HOM05D010575 ORTHO05D001927 5.0e-06 55.8 83 36.1
Carub.0006s0269 Capsella rubella HOM05D010575 ORTHO05D001927 5.0e-06 55.8 113 34.5
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 5.0e-06 55.8 55 32.7
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.0e-06 55.8 67 37.3
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 5.0e-06 55.8 70 30.0
Sp7g08980 Schrenkiella parvula HOM05D021191 ORTHO05D001927 5.0e-06 55.8 150 30.0
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 5.0e-06 55.8 78 30.8
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 5.0e-06 55.8 78 32.1
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 5.0e-06 55.8 105 33.3
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 6.5e-06 55.5 64 34.4
BraA09t36075Z Brassica rapa HOM05D010575 ORTHO05D001927 6.5e-06 55.5 110 32.7
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 6.5e-06 55.5 62 32.3
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 6.5e-06 55.5 121 28.1
VMungo1127G0424 Vigna mungo HOM05D002477 ORTHO05D001927 6.5e-06 55.5 61 42.6
Actinidia35194 Actinidia chinensis HOM05D002477 ORTHO05D001927 8.5e-06 55.1 69 46.4
BolC9t53397H Brassica oleracea HOM05D010575 ORTHO05D001927 8.5e-06 55.1 106 32.1
Carub.0002s1033 Capsella rubella HOM05D002477 ORTHO05D001927 8.5e-06 55.1 49 49.0
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 8.5e-06 55.1 84 29.8
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 8.5e-06 55.1 72 30.6
Sp2g18670 Schrenkiella parvula HOM05D010575 ORTHO05D001927 8.5e-06 55.1 125 32.0


User provided reference genes

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