Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-166 589.7 299 100.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.7e-158 561.2 299 95.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 3.0e-157 558.5 300 94.7
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.0e-156 555.8 314 91.4
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.5e-156 553.9 299 93.6
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-155 553.1 314 90.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.5e-153 545.0 319 88.4
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.6e-142 509.6 302 85.8
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.4e-122 443.4 302 73.5
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.5e-111 406.8 299 68.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 9.6e-111 404.1 302 68.2
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.3e-110 403.7 304 68.1
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.8e-110 402.5 332 63.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.6e-108 396.0 300 69.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.9e-107 392.5 299 67.2
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 9.3e-106 387.5 304 64.5
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.0e-104 384.0 305 65.6
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.1e-102 376.3 302 60.3
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 2.8e-102 375.9 301 63.1
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 4.0e-101 372.1 300 63.3
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 3.4e-100 369.0 298 63.4
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 3.4e-100 369.0 301 62.1
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 7.6e-100 367.9 301 61.8
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.0e-99 367.5 303 63.7
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.7e-99 366.7 301 62.8
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 1.4e-98 363.6 303 62.7
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.9e-98 363.2 287 64.5
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.2e-98 362.5 303 63.0
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.1e-97 359.8 301 62.5
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 2.3e-96 356.3 303 60.4
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 3.9e-96 355.5 299 60.2
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 6.7e-96 354.8 300 61.0
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 8.7e-96 354.4 299 60.2
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.3e-95 352.4 304 62.2
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 4.3e-95 352.1 299 59.5
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 5.7e-95 351.7 305 60.3
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 2.8e-94 349.4 300 60.3
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.4e-93 346.3 365 51.2
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 5.3e-93 345.1 301 57.5
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 1.5e-92 343.6 297 60.3
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.9e-92 341.7 228 71.9
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 7.7e-92 341.3 238 69.3
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 2.2e-91 339.7 328 55.8
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 3.8e-91 339.0 296 57.4
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 8.5e-91 337.8 308 59.1
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.9e-90 336.7 318 54.7
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 1.9e-90 336.7 318 55.3
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.5e-90 335.1 318 55.7
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 7.2e-90 334.7 276 63.0
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.2e-89 334.0 320 55.6
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.6e-89 333.6 318 54.4
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.6e-89 332.4 331 54.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.6e-89 332.0 300 57.7
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 6.1e-89 331.6 318 54.1
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 6.1e-89 331.6 279 58.8
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 6.1e-89 331.6 252 65.9
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 1.0e-88 330.9 306 56.9
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.0e-88 330.9 233 70.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 3.0e-88 329.3 317 53.9
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 5.1e-88 328.6 301 56.8
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 6.7e-88 328.2 317 54.6
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.5e-87 327.0 219 72.1
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.5e-87 327.0 274 62.0
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.5e-87 326.2 277 59.2
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 3.3e-87 325.9 333 51.7
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.3e-87 325.9 330 51.2
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 9.7e-87 324.3 243 65.4
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 9.7e-87 324.3 219 70.8
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-86 323.6 277 58.1
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.7e-86 323.6 299 53.8
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.2e-86 323.2 272 61.4
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.5e-84 317.0 276 60.5
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.9e-84 315.1 307 55.4
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.7e-83 313.5 240 65.8
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.2e-83 313.2 215 71.2
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.6e-81 307.0 205 69.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.6e-81 305.8 233 62.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 6.7e-80 301.6 197 72.6
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 7.4e-79 298.1 300 53.7
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 6.3e-78 295.0 278 59.7
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 7.0e-77 291.6 253 59.3
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 5.0e-75 285.4 216 62.5
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.9e-74 283.5 205 67.8
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.2e-73 280.8 316 51.6
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 3.9e-72 275.8 175 75.4
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 2.0e-71 273.5 300 50.7
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 2.0e-68 263.5 178 70.8
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 3.2e-66 256.1 268 51.9
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 4.2e-66 255.8 230 57.0
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 2.2e-62 243.4 466 36.3
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.8e-62 242.3 236 55.5
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 4.5e-60 235.7 177 64.4
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 3.8e-59 232.6 251 54.2
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 5.9e-52 208.8 271 46.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 5.0e-51 205.7 200 52.0
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 2.5e-50 203.4 222 49.1
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 4.2e-50 202.6 217 48.4
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.1e-49 200.3 275 38.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.0e-48 198.0 228 51.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.0e-48 196.4 288 43.8
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 9.8e-47 191.4 157 61.1
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 1.1e-45 188.0 238 43.7
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.6e-44 184.1 263 42.6
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 5.2e-40 169.1 154 58.4
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.2e-39 167.9 157 56.7
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.6e-35 152.1 274 39.4
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 3.6e-33 146.4 154 48.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.1e-25 120.6 72 75.0
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 7.5e-23 112.1 201 31.8
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 1.7e-22 110.9 68 69.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 4.6e-20 102.8 58 82.8
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.5e-15 87.8 113 50.4
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.1e-13 81.6 92 43.5
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.5e-12 76.6 97 47.4
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.6e-11 72.4 52 59.6
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 3.6e-09 66.6 46 67.4
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-08 63.5 49 61.2
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.3e-08 62.8 33 84.8
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 2.0e-07 60.8 87 37.9
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 3.4e-07 60.1 98 38.8
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 3.4e-07 60.1 98 38.8
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 3.4e-07 60.1 85 38.8
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 9.9e-07 58.5 90 36.7
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-06 57.4 56 48.2
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-06 57.4 58 46.6
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 6.4e-06 55.8 58 46.6
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 8.4e-06 55.5 58 44.8
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 8.4e-06 55.5 58 44.8


User provided reference genes

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