Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4423 Fragaria x ananassa HOM05D000031 ORTHO05D200629 3.5e-76 288.1 138 100.0
FAN14G0112 Fragaria x ananassa HOM05D000031 ORTHO05D001864 3.6e-36 155.2 221 45.2
RcHm_v2.0_Chr3g0465341 Rosa chinensis HOM05D000031 ORTHO05D009851 3.0e-14 82.4 46 82.6
Prupe.6G261100 Prunus persica HOM05D000031 ORTHO05D001864 2.5e-13 79.3 54 70.4
Eucgr.B02708 Eucalyptus grandis HOM05D000031 ORTHO05D001864 2.1e-12 76.3 52 65.4
Eucgr.B02707 Eucalyptus grandis HOM05D000031 ORTHO05D001864 4.7e-12 75.1 52 61.5
Eucgr.B02709 Eucalyptus grandis HOM05D000031 ORTHO05D001864 6.2e-12 74.7 52 63.5
Ciclev10013798m.g Citrus clementina HOM05D000031 ORTHO05D001864 6.8e-11 71.2 88 45.5
MD12G1149600 Malus domestica HOM05D000031 ORTHO05D001864 2.0e-10 69.7 53 64.2
PGR031G2930 Punica granatum HOM05D000031 ORTHO05D001864 9.8e-10 67.4 59 55.9
Lj2C89T11 Lonicera japonica HOM05D000031 ORTHO05D001864 2.9e-09 65.9 58 53.4
CiPaw.09G198000 Carya illinoinensis HOM05D000031 ORTHO05D001864 6.4e-09 64.7 60 56.7
Glyma.07G136900 Glycine max HOM05D000031 ORTHO05D001864 1.4e-08 63.5 102 42.2
COL.COLO4_14742 Corchorus olitorius HOM05D000031 ORTHO05D001864 4.1e-08 62.0 52 55.8
Lj1g0002746 Lotus japonicus HOM05D000031 ORTHO05D001864 4.1e-08 62.0 66 51.5
Cpa.g.sc19.265 Carica papaya HOM05D000031 ORTHO05D009851 5.4e-08 61.6 48 58.3
Gohir.A04G084800 Gossypium hirsutum HOM05D000031 ORTHO05D001864 7.1e-08 61.2 52 53.8
Gorai.012G106700 Gossypium raimondii HOM05D000031 ORTHO05D001864 7.1e-08 61.2 52 53.8
QL07p028944 Quercus lobata HOM05D000031 ORTHO05D001864 9.2e-08 60.8 66 51.5
QL07p029625 Quercus lobata HOM05D000031 ORTHO05D001864 9.2e-08 60.8 66 51.5
GSVIVG01034108001 Vitis vinifera HOM05D000031 ORTHO05D001864 1.6e-07 60.1 58 51.7
Gohir.D04G123700 Gossypium hirsutum HOM05D000031 ORTHO05D001864 2.1e-07 59.7 52 51.9
HanXRQChr10g0312661 Helianthus annuus HOM05D000031 ORTHO05D001864 2.7e-07 59.3 107 36.4
HanXRQChr10g0312701 Helianthus annuus HOM05D000031 ORTHO05D001864 2.7e-07 59.3 107 36.4
Lsat_1_v5_gn_2_118001 Lactuca sativa HOM05D000031 ORTHO05D001864 2.7e-07 59.3 58 50.0
ECA238G2499 Erigeron canadensis HOM05D000031 ORTHO05D001864 4.6e-07 58.5 58 46.6
Manes.08G079900 Manihot esculenta HOM05D000031 ORTHO05D001864 4.6e-07 58.5 66 42.4
SalBow5G1340 Salvia bowleyana HOM05D000031 ORTHO05D001864 6.0e-07 58.2 58 46.6
SalBow5G4819 Salvia bowleyana HOM05D000031 ORTHO05D001864 6.0e-07 58.2 58 46.6
Thecc.05G033100 Theobroma cacao HOM05D000031 ORTHO05D001864 6.0e-07 58.2 52 53.8
Nn6g35622 Nelumbo nucifera HOM05D000031 ORTHO05D001864 7.8e-07 57.8 88 39.8
Oeu030902.1 Olea europaea HOM05D000031 ORTHO05D001864 7.8e-07 57.8 59 47.5
Psat5g040720 Pisum sativum HOM05D000031 ORTHO05D001864 7.8e-07 57.8 49 55.1
Solyc09g011200.2 Solanum lycopersicum HOM05D000031 ORTHO05D001864 7.8e-07 57.8 46 54.3
CsaV3_4G009530 Cucumis sativus L. HOM05D000031 ORTHO05D001864 1.0e-06 57.4 88 38.6
CsaV3_4G009540 Cucumis sativus L. HOM05D000031 ORTHO05D001864 1.0e-06 57.4 88 38.6
RcHm_v2.0_Chr3g0483591 Rosa chinensis HOM05D000031 ORTHO05D001864 1.0e-06 57.4 58 44.8
Nn2g13485 Nelumbo nucifera HOM05D000031 ORTHO05D001864 1.3e-06 57.0 57 49.1
TAR623G0104 Trochodendron aralioides HOM05D000031 ORTHO05D001864 1.3e-06 57.0 88 39.8
Aqoxy1G00835 Aquilegia oxysepala HOM05D000031 ORTHO05D001864 1.7e-06 56.6 58 46.6
ClCG04G007920 Citrullus lanatus HOM05D000031 ORTHO05D001864 2.3e-06 56.2 92 33.7
Nn2g13484 Nelumbo nucifera HOM05D000031 ORTHO05D001864 2.3e-06 56.2 58 48.3
Solyc12g088040.2 Solanum lycopersicum HOM05D000031 ORTHO05D001864 2.3e-06 56.2 57 47.4
CsaV3_6G001360 Cucumis sativus L. HOM05D000031 ORTHO05D001864 3.0e-06 55.8 107 34.6
BcaC07g39740 Brassica carinata HOM05D000031 ORTHO05D001864 3.9e-06 55.5 60 43.3
C08p29140 Brassica napus HOM05D000031 ORTHO05D001864 3.9e-06 55.5 60 43.3
BolC8t50514H Brassica oleracea HOM05D000031 ORTHO05D001864 3.9e-06 55.5 60 43.3
CANSAT35G0101 Cannabis sativa HOM05D000031 ORTHO05D001864 3.9e-06 55.5 49 46.9
Cfa001421 Carpinus fangiana HOM05D000031 ORTHO05D001864 3.9e-06 55.5 58 46.6
Haze_17124 Corylus avellana HOM05D000031 ORTHO05D001864 3.9e-06 55.5 58 46.6
Nitab4.5_0003362g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 3.9e-06 55.5 47 53.2
Nitab4.5_0008396g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 3.9e-06 55.5 47 53.2
QL08p061385 Quercus lobata HOM05D000031 ORTHO05D009851 3.9e-06 55.5 58 43.1
RcHm_v2.0_Chr1g0368501 Rosa chinensis HOM05D000031 ORTHO05D001864 3.9e-06 55.5 58 43.1
TPR.G17623 Trifolium pratense HOM05D000031 ORTHO05D001864 3.9e-06 55.5 47 55.3
CsaV3_6G007570 Cucumis sativus L. HOM05D000031 ORTHO05D001864 5.1e-06 55.1 48 52.1
Manes.07G119900 Manihot esculenta HOM05D000031 ORTHO05D001864 5.1e-06 55.1 83 36.1
Medtr3g069050 Medicago truncatula HOM05D000031 ORTHO05D001864 5.1e-06 55.1 109 35.8
Nitab4.5_0000987g0100 Nicotiana tabacum HOM05D000031 ORTHO05D001864 5.1e-06 55.1 52 50.0
Nitab4.5_0003804g0010 Nicotiana tabacum HOM05D000031 ORTHO05D001864 5.1e-06 55.1 52 50.0
Oeu031364.1 Olea europaea HOM05D000031 ORTHO05D001864 5.1e-06 55.1 52 53.8
VMungo1383G0748 Vigna mungo HOM05D000031 ORTHO05D001864 5.1e-06 55.1 88 38.6
MELO3C003153.2 Cucumis melo HOM05D000031 ORTHO05D001864 6.6e-06 54.7 88 36.4
CsaV3_4G025270 Cucumis sativus L. HOM05D000031 ORTHO05D001864 6.6e-06 54.7 88 36.4
FAN03G0519 Fragaria x ananassa HOM05D000031 ORTHO05D001864 6.6e-06 54.7 58 41.4
Lalb_Chr18g0052981 Lupinus albus HOM05D000031 ORTHO05D001864 6.6e-06 54.7 58 46.6
Peaxi162Scf00584g00022 Petunia axillaris HOM05D000031 ORTHO05D001864 6.6e-06 54.7 47 51.1
arahy.Tifrunner.gnm1.ann1.89PCLJ Arachis hypogaea HOM05D000031 ORTHO05D001864 8.6e-06 54.3 49 53.1
MELO3C029803.2 Cucumis melo HOM05D000031 ORTHO05D001864 8.6e-06 54.3 56 44.6
Lj8C79G4 Lonicera japonica HOM05D000031 ORTHO05D009851 8.6e-06 54.3 88 39.8


User provided reference genes

Program Settings