Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4419 Fragaria x ananassa HOM05D001206 ORTHO05D205713 3.1e-66 255.0 127 100.0
FAN25G3564 Fragaria x ananassa HOM05D001206 ORTHO05D005935 6.9e-10 67.8 39 89.7
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.1e-10 67.4 37 91.9
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 2.0e-09 66.2 37 89.2
FAN26G0979 Fragaria x ananassa HOM05D001206 ORTHO05D016673 2.6e-09 65.9 37 89.2
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 3.4e-09 65.5 37 83.8
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 4.5e-09 65.1 35 88.6
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 4.5e-09 65.1 37 86.5
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 4.5e-09 65.1 37 89.2
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 5.9e-09 64.7 37 83.8
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 1.0e-08 63.9 37 81.1
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 1.0e-08 63.9 35 85.7
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 1.0e-08 63.9 37 86.5
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 1.3e-08 63.5 35 88.6
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 1.3e-08 63.5 37 83.8
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 1.3e-08 63.5 37 83.8
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 1.7e-08 63.2 37 83.8
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.7e-08 63.2 37 81.1
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 1.7e-08 63.2 37 81.1
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 1.7e-08 63.2 37 83.8
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 1.7e-08 63.2 37 83.8
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 2.2e-08 62.8 37 81.1
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.2e-08 62.8 37 83.8
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 2.2e-08 62.8 35 85.7
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 2.9e-08 62.4 37 81.1
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 3.8e-08 62.0 37 81.1
FAN21G1587 Fragaria x ananassa HOM05D001206 ORTHO05D005935 3.8e-08 62.0 66 57.6
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 5.0e-08 61.6 37 81.1
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 5.0e-08 61.6 37 78.4
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 5.0e-08 61.6 37 78.4
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 5.0e-08 61.6 37 78.4
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 6.5e-08 61.2 37 81.1
FvH4_5g31820 Fragaria vesca HOM05D001206 ORTHO05D005935 6.5e-08 61.2 41 75.6
FAN09G3714 Fragaria x ananassa HOM05D001642 ORTHO05D010488 6.5e-08 61.2 34 88.2
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 8.5e-08 60.8 37 81.1
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 8.5e-08 60.8 37 81.1
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 8.5e-08 60.8 37 81.1
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 8.5e-08 60.8 37 81.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 8.5e-08 60.8 37 78.4
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 8.5e-08 60.8 37 78.4
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 1.1e-07 60.5 37 75.7
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 1.1e-07 60.5 37 78.4
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 1.1e-07 60.5 37 75.7
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 37 75.7
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 1.1e-07 60.5 35 85.7
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.4e-07 60.1 37 78.4
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 1.4e-07 60.1 37 73.0
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 1.9e-07 59.7 35 82.9
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 1.9e-07 59.7 37 78.4
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 1.9e-07 59.7 35 82.9
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 1.9e-07 59.7 37 78.4
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 1.9e-07 59.7 37 75.7
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 2.5e-07 59.3 37 75.7
FAN18G2655 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.5e-07 59.3 40 75.0
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 2.5e-07 59.3 37 75.7
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 2.5e-07 59.3 36 75.0
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 2.5e-07 59.3 37 75.7
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 2.5e-07 59.3 37 75.7
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 3.2e-07 58.9 37 75.7
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 3.2e-07 58.9 37 75.7
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 3.2e-07 58.9 35 77.1
FAN06G1107 Fragaria x ananassa HOM05D001206 ORTHO05D005935 4.2e-07 58.5 60 53.3
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 5.5e-07 58.2 37 75.7
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 5.5e-07 58.2 37 75.7
FvH4_7g03390 Fragaria vesca HOM05D001206 ORTHO05D005935 5.5e-07 58.2 46 67.4
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 5.5e-07 58.2 35 77.1
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 7.2e-07 57.8 37 73.0
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 7.2e-07 57.8 35 77.1
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 7.2e-07 57.8 36 75.0
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 7.2e-07 57.8 36 75.0
FvH4_4g05790 Fragaria vesca HOM05D001206 ORTHO05D005935 9.4e-07 57.4 44 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 1.2e-06 57.0 35 71.4
FvH4_4g03380 Fragaria vesca HOM05D001206 ORTHO05D005935 1.2e-06 57.0 63 55.6
FvH4_6g33420 Fragaria vesca HOM05D001206 ORTHO05D005935 1.2e-06 57.0 63 55.6
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.2e-06 57.0 37 73.0
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.2e-06 57.0 37 73.0
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.2e-06 57.0 37 73.0
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 1.6e-06 56.6 35 74.3
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.6e-06 56.6 37 70.3
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 2.1e-06 56.2 37 70.3
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 2.7e-06 55.8 37 70.3
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 2.7e-06 55.8 37 70.3
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 2.7e-06 55.8 37 70.3
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 2.7e-06 55.8 35 74.3
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 3.6e-06 55.5 37 70.3


User provided reference genes

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