Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4399 Fragaria x ananassa HOM05D006431 ORTHO05D007918 7.6e-244 846.7 405 100.0
FvH4_6g19780 Fragaria vesca HOM05D006431 ORTHO05D007918 1.8e-221 772.3 436 87.4
FAN02G3461 Fragaria x ananassa HOM05D006431 ORTHO05D007918 5.3e-221 770.8 436 87.6
FAN05G1952 Fragaria x ananassa HOM05D006431 ORTHO05D007918 5.5e-218 760.8 436 86.9
FAN05G2067 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.2e-217 759.6 435 86.9
RcHm_v2.0_Chr3g0475131 Rosa chinensis HOM05D006431 ORTHO05D007918 2.2e-214 748.8 436 83.9
FAN14G3124 Fragaria x ananassa HOM05D006431 ORTHO05D007918 5.7e-207 724.2 383 91.4
MD14G1033800 Malus domestica HOM05D006431 ORTHO05D007918 7.0e-181 637.5 436 72.5
Potri.006G206200 Populus trichocarpa HOM05D006431 ORTHO05D007918 1.5e-167 593.2 436 67.0
QL07p037629 Quercus lobata HOM05D006431 ORTHO05D007918 9.8e-167 590.5 435 67.1
CANSAT64G0076 Cannabis sativa HOM05D006431 ORTHO05D007918 6.4e-166 587.8 439 64.9
Atru.chr8.1414 Acer truncatum HOM05D006431 ORTHO05D007918 1.1e-165 587.0 434 66.8
GSVIVG01033921001 Vitis vinifera HOM05D006431 ORTHO05D007918 2.4e-165 585.9 436 66.1
CSS0044043 Camellia sinensis var. sinensis HOM05D006431 ORTHO05D007918 7.0e-165 584.3 436 65.1
Haze_19670 Corylus avellana HOM05D006431 ORTHO05D007918 7.0e-165 584.3 478 62.1
Cfa016661 Carpinus fangiana HOM05D006431 ORTHO05D007918 2.7e-164 582.4 436 66.3
Prupe.7G099200 Prunus persica HOM05D006431 ORTHO05D007918 4.6e-164 581.6 437 68.0
Actinidia03906 Actinidia chinensis HOM05D006431 ORTHO05D007918 2.3e-163 579.3 436 65.4
Actinidia04011 Actinidia chinensis HOM05D006431 ORTHO05D007918 2.3e-163 579.3 436 65.4
Glyma.19G197300 Glycine max HOM05D006431 ORTHO05D007918 1.1e-162 577.0 436 64.4
Thecc.05G099600 Theobroma cacao HOM05D006431 ORTHO05D007918 1.5e-162 576.6 436 64.2
Rhsim03G0067800 Rhododendron simsii HOM05D006431 ORTHO05D007918 2.5e-162 575.9 440 65.2
ClCG10G018580 Citrullus lanatus HOM05D006431 ORTHO05D007918 5.6e-162 574.7 438 64.6
Glyma.03G199700 Glycine max HOM05D006431 ORTHO05D007918 5.6e-162 574.7 436 64.2
Gorai.006G151400 Gossypium raimondii HOM05D006431 ORTHO05D007918 3.6e-161 572.0 436 64.0
Medtr7g105640 Medicago truncatula HOM05D006431 ORTHO05D007918 4.7e-161 571.6 436 64.4
CAN.G841.8 Capsicum annuum HOM05D006431 ORTHO05D007918 6.2e-161 571.2 433 66.1
CiPaw.10G014500 Carya illinoinensis HOM05D006431 ORTHO05D007918 3.1e-160 568.9 436 65.1
TPR.G23342 Trifolium pratense HOM05D006431 ORTHO05D007918 4.0e-160 568.5 436 64.4
Manes.08G030500 Manihot esculenta HOM05D006431 ORTHO05D007918 5.2e-160 568.2 436 64.7
DCAR_013426 Daucus carota HOM05D006431 ORTHO05D007918 6.8e-160 567.8 434 63.6
Lj1g0021923 Lotus japonicus HOM05D006431 ORTHO05D007918 6.8e-160 567.8 436 64.7
VMungo1383G3444 Vigna mungo HOM05D006431 ORTHO05D007918 8.9e-160 567.4 436 63.5
arahy.Tifrunner.gnm1.ann1.262DHG Arachis hypogaea HOM05D006431 ORTHO05D007918 5.8e-159 564.7 450 63.3
Peaxi162Scf01662g00115 Petunia axillaris HOM05D006431 ORTHO05D007918 1.7e-158 563.1 434 64.5
arahy.Tifrunner.gnm1.ann1.P24J4F Arachis hypogaea HOM05D006431 ORTHO05D007918 3.7e-158 562.0 437 63.8
Cc00_g18360 Coffea canephora HOM05D006431 ORTHO05D007918 6.4e-158 561.2 434 64.3
Gohir.A09G137300 Gossypium hirsutum HOM05D006431 ORTHO05D007918 6.4e-158 561.2 442 62.4
Phvul.001G193600 Phaseolus vulgaris HOM05D006431 ORTHO05D007918 8.3e-158 560.8 436 62.8
Aqoxy2G01023 Aquilegia oxysepala HOM05D006431 ORTHO05D007918 5.4e-157 558.1 436 63.1
Psat3g030600 Pisum sativum HOM05D006431 ORTHO05D007918 9.2e-157 557.4 436 63.5
TWI74G1016 Tripterygium wilfordii HOM05D006431 ORTHO05D007918 1.6e-156 556.6 436 62.4
CsaV3_3G037660 Cucumis sativus L. HOM05D006431 ORTHO05D007918 2.7e-156 555.8 436 62.8
Ciclev10011702m.g Citrus clementina HOM05D006431 ORTHO05D007918 6.0e-156 554.7 418 65.1
Nitab4.5_0001801g0020 Nicotiana tabacum HOM05D006431 ORTHO05D007918 1.0e-155 553.9 435 63.0
vmacro07456 Vaccinium macrocarpon HOM05D006431 ORTHO05D007918 1.5e-154 550.1 466 59.4
PGR004G1888 Punica granatum HOM05D006431 ORTHO05D007918 4.3e-154 548.5 436 62.4
Lalb_Chr20g0111521 Lupinus albus HOM05D006431 ORTHO05D007918 5.6e-154 548.1 436 62.4
MSTRG.26617 Avicennia marina HOM05D006431 ORTHO05D007918 1.6e-153 546.6 433 63.7
MELO3C009510.2 Cucumis melo HOM05D006431 ORTHO05D007918 2.8e-153 545.8 442 62.0
PSO801G0006 Papaver somniferum HOM05D006431 ORTHO05D007918 8.1e-153 544.3 436 60.8
ECA248G2099 Erigeron canadensis HOM05D006431 ORTHO05D007918 1.8e-152 543.1 432 60.6
Sed0017910 Sechium edule HOM05D006431 ORTHO05D007918 2.3e-152 542.7 439 61.7
Sabra06G0159100 Salix brachista HOM05D006431 ORTHO05D007918 3.1e-152 542.3 566 52.5
PSO801G0231 Papaver somniferum HOM05D006431 ORTHO05D007918 4.0e-152 542.0 436 60.6
SGA_v2.0_scaffold35G14028 Striga asiatica HOM05D006431 ORTHO05D007918 3.4e-151 538.9 432 61.1
THA.LOC104826813 Tarenaya hassleriana HOM05D006431 ORTHO05D007918 3.7e-150 535.4 435 62.5
HanXRQChr01g0025171 Helianthus annuus HOM05D006431 ORTHO05D007918 6.4e-150 534.6 433 61.2
Sopen10g032630 Solanum pennellii HOM05D006431 ORTHO05D007918 1.4e-149 533.5 433 62.1
Solyc10g083160.2 Solanum lycopersicum HOM05D006431 ORTHO05D007918 2.4e-149 532.7 433 62.1
Migut.L01812 Erythranthe guttata HOM05D006431 ORTHO05D007918 1.2e-148 530.4 433 60.0
Lsat_1_v5_gn_1_57580 Lactuca sativa HOM05D006431 ORTHO05D007918 1.7e-147 526.6 425 62.1
AT5G06260 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 5.6e-146 521.5 435 60.7
Eucgr.A02614 Eucalyptus grandis HOM05D006431 ORTHO05D007918 5.6e-146 521.5 437 59.5
Dinv31736 Davidia involucrata HOM05D006431 ORTHO05D007918 1.2e-145 520.4 435 61.6
AL6G16280 Arabidopsis lyrata HOM05D006431 ORTHO05D007918 2.8e-145 519.2 435 60.5
CARHR206960 Cardamine hirsuta HOM05D006431 ORTHO05D007918 6.2e-145 518.1 435 60.9
Nn2g14247 Nelumbo nucifera HOM05D006431 ORTHO05D007918 3.1e-144 515.8 436 59.6
Carub.0006s0514 Capsella rubella HOM05D006431 ORTHO05D007918 2.0e-143 513.1 435 60.2
ATR0772G016 Amborella trichopoda HOM05D006431 ORTHO05D007918 5.8e-143 511.5 436 57.6
C09p70630 Brassica napus HOM05D006431 ORTHO05D007918 1.3e-142 510.4 435 60.7
BcaC06g32355 Brassica carinata HOM05D006431 ORTHO05D007918 1.7e-142 510.0 439 60.4
Thhalv10013633m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 2.9e-142 509.2 435 59.5
Sp6g36610 Schrenkiella parvula HOM05D006431 ORTHO05D007918 3.8e-142 508.8 435 60.0
BraA10t45060Z Brassica rapa HOM05D006431 ORTHO05D007918 1.4e-141 506.9 435 60.7
Hund03878 Selenicereus undatus HOM05D006431 ORTHO05D007918 1.4e-141 506.9 434 56.9
unitig_899.g15199 Utricularia gibba HOM05D006431 ORTHO05D007918 9.2e-141 504.2 433 57.5
SalBow5G2287 Salvia bowleyana HOM05D006431 ORTHO05D007918 1.2e-140 503.8 433 58.9
Duzib093G0136 Durio zibethinus HOM05D006431 ORTHO05D007918 2.7e-140 502.7 434 58.5
AUR62006262 Chenopodium quinoa HOM05D006431 ORTHO05D007918 4.6e-140 501.9 435 57.5
EL10Ac7g16823 Beta vulgaris HOM05D006431 ORTHO05D007918 1.0e-139 500.7 435 58.9
BcaC06g32336 Brassica carinata HOM05D006431 ORTHO05D007918 5.1e-139 498.4 435 59.8
BolC9t59819H Brassica oleracea HOM05D006431 ORTHO05D007918 5.1e-139 498.4 435 59.8
AUR62028512 Chenopodium quinoa HOM05D006431 ORTHO05D007918 8.7e-139 497.7 435 57.5
Ah.15g090560 Amaranthus hybridus HOM05D006431 ORTHO05D007918 2.8e-137 492.7 447 54.8
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.1e-136 490.7 418 57.7
HPP92_023016 Vanilla planifolia HOM05D006431 ORTHO05D007918 4.9e-134 481.9 436 54.4
COL.COLO4_29622 Corchorus olitorius HOM05D006431 ORTHO05D007918 1.9e-133 479.9 371 62.0
Os12g0157200 Oryza sativa ssp. japonica HOM05D006431 ORTHO05D007918 5.1e-131 471.9 437 54.2
Aa31sc52G40 Aethionema arabicum HOM05D006431 ORTHO05D007918 6.6e-131 471.5 510 50.6
Zm00001eb407020 Zea mays HOM05D006431 ORTHO05D007918 5.4e-125 451.8 437 52.9
Cpa.g.sc104.72 Carica papaya HOM05D006431 ORTHO05D007918 1.0e-123 447.6 477 50.9
A10p30220 Brassica napus HOM05D006431 ORTHO05D007918 6.7e-123 444.9 383 59.8
Pp3c10_6920 Physcomitrium patens HOM05D006431 ORTHO05D007918 2.2e-118 429.9 436 48.9
Sc02g0000490 Simmondsia chinensis HOM05D006431 ORTHO05D007918 2.1e-116 423.3 351 58.7
Mapoly0002s0288 Marchantia polymorpha HOM05D006431 ORTHO05D007918 3.7e-113 412.5 441 48.5
SMO358G0080 Selaginella moellendorffii HOM05D006431 ORTHO05D007918 6.9e-112 408.3 440 45.9
Lj1A1036G18 Lonicera japonica HOM05D006431 ORTHO05D007918 1.9e-109 400.2 317 63.4
Oeu017704.1 Olea europaea HOM05D006431 ORTHO05D007918 2.7e-108 396.4 474 46.4
PSO339G1068 Papaver somniferum HOM05D006431 ORTHO05D007918 2.9e-102 376.3 334 56.3
CDE12G0869 Ceratophyllum demersum HOM05D006431 ORTHO05D007918 1.4e-99 367.5 426 46.7
Nitab4.5_0006555g0060 Nicotiana tabacum HOM05D006431 ORTHO05D007918 4.1e-96 355.9 293 61.1
MBI17_g45031_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.2e-84 317.8 208 73.1
MBI17_g39691_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.6e-84 317.4 208 72.6
MBI18_g45360_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 5.2e-75 285.8 211 65.9
AagrBONN_evm.TU.Sc2ySwM_368.1429 Anthoceros agrestis HOM05D006431 ORTHO05D007918 1.1e-72 278.1 368 41.0
Thhalv10029204m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 2.2e-70 270.4 271 52.4
AT4G34070 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 1.8e-67 260.8 256 54.7
Nitab4.5_0006555g0050 Nicotiana tabacum HOM05D006431 ORTHO05D007918 4.6e-39 166.4 117 70.9
TAR623G0798 Trochodendron aralioides HOM05D006431 ORTHO05D007918 2.1e-36 157.5 99 75.8
MBI17_g27947_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 2.8e-36 157.1 115 64.3
MBI17_g46230_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 4.7e-36 156.4 106 68.9
SEGI_13589 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 6.8e-35 152.5 120 56.7
SEGI_02239 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 7.1e-32 142.5 105 60.0
HPP92_023056 Vanilla planifolia HOM05D006431 ORTHO05D007918 7.8e-31 139.0 100 64.0
Cre10.g436950 Chlamydomonas reinhardtii HOM05D006431 ORTHO05D007918 7.3e-29 132.5 168 40.5
CsaV3_1G024120 Cucumis sativus L. HOM05D006431 ORTHO05D007918 2.4e-27 127.5 102 54.9
Hma1.2p1_0064F.1_g034930 Hydrangea macrophylla HOM05D006431 ORTHO05D007918 2.2e-25 120.9 88 71.6
Hma1.2p1_1131F.1_g260030 Hydrangea macrophylla HOM05D006431 ORTHO05D007918 2.2e-25 120.9 88 71.6
AT2G45380 Arabidopsis thaliana HOM05D002260 ORTHO05D000476 1.5e-21 108.2 87 65.5
Mapoly0102s0056 Marchantia polymorpha HOM05D002111 ORTHO05D002160 5.1e-14 83.2 158 29.1
PGSC0003DMG400029252 Solanum tuberosum HOM05D002111 ORTHO05D002160 4.3e-13 80.1 209 31.1
Cre10.g439550 Chlamydomonas reinhardtii HOM05D002111 ORTHO05D002160 1.3e-12 78.6 165 29.1
CAN.G566.16 Capsicum annuum HOM05D002111 ORTHO05D002160 1.6e-12 78.2 166 30.1
CBR_g49969 Chara braunii HOM05D002111 ORTHO05D002160 2.8e-12 77.4 166 29.5
Sopen12g032760 Solanum pennellii HOM05D002111 ORTHO05D002160 8.1e-12 75.9 166 31.3
Mapoly0104s0023 Marchantia polymorpha HOM05D002111 ORTHO05D002160 6.9e-11 72.8 175 30.9
Actinidia35815 Actinidia chinensis HOM05D002111 ORTHO05D002160 2.2e-09 67.8 173 28.9
CSS0008784 Camellia sinensis var. sinensis HOM05D002111 ORTHO05D002160 3.8e-09 67.0 166 28.3
Haze_11455 Corylus avellana HOM05D002111 ORTHO05D002160 5.4e-08 63.2 147 29.9
Manes.03G159300 Manihot esculenta HOM05D002111 ORTHO05D002160 5.4e-08 63.2 166 27.1
Pp3c23_20180 Physcomitrium patens HOM05D002111 ORTHO05D002160 5.4e-08 63.2 160 26.9
FAN03G0727 Fragaria x ananassa HOM05D015851 ORTHO05D020632 1.2e-07 62.0 61 52.5
Rhsim04G0172600 Rhododendron simsii HOM05D002111 ORTHO05D002160 2.7e-07 60.8 217 26.3
Pp3c24_19410 Physcomitrium patens HOM05D002111 ORTHO05D002160 7.9e-07 59.3 163 27.0
Ca_11903_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 1.3e-06 58.5 111 33.3
FvH4_7g01241 Fragaria vesca HOM05D015851 ORTHO05D007918 8.7e-06 55.8 33 72.7


User provided reference genes

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