Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.1e-262 909.4 446 100.0
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 5.0e-196 688.0 452 78.5
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.2e-195 684.1 453 78.4
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.4e-195 683.7 450 78.2
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.4e-168 595.1 427 75.9
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.4e-166 589.3 453 70.2
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.3e-147 525.8 457 61.9
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 4.7e-146 521.9 449 62.1
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 6.8e-145 518.1 461 60.5
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.0e-132 477.6 457 57.1
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 5.1e-132 475.3 449 57.0
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 5.6e-131 471.9 457 57.5
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 5.6e-131 471.9 450 57.1
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.6e-131 471.9 449 58.1
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.8e-130 469.5 426 59.9
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 4.7e-130 468.8 457 56.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.4e-129 467.2 446 58.1
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.4e-129 467.2 448 57.8
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.4e-129 467.2 458 57.2
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.5e-128 463.8 442 57.0
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 7.6e-128 461.5 450 56.7
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 7.6e-128 461.5 449 57.5
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.9e-127 459.5 463 56.6
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.1e-126 457.6 448 57.4
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.9e-126 456.8 457 55.8
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.4e-126 456.4 454 55.5
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.2e-126 456.1 446 57.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 5.4e-126 455.3 459 56.6
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 7.1e-126 454.9 457 55.6
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 3.5e-125 452.6 453 56.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.6e-125 452.2 451 56.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.0e-124 451.1 455 56.3
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.3e-124 450.7 457 56.2
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 3.0e-124 449.5 445 55.3
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.9e-123 446.8 434 55.5
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.9e-123 446.8 448 54.5
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 3.3e-123 446.0 453 54.7
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.1e-122 443.4 444 55.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-121 440.7 450 54.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.4e-121 439.9 442 55.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 6.9e-121 438.3 421 56.1
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 6.9e-121 438.3 442 55.2
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.4e-120 435.6 440 54.8
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 5.8e-120 435.3 441 53.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 7.6e-120 434.9 462 54.3
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 7.6e-120 434.9 464 54.1
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 2.2e-119 433.3 426 56.8
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.9e-119 433.0 443 54.0
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.9e-119 433.0 443 54.0
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.9e-119 433.0 462 53.5
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.8e-119 432.6 449 55.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 8.4e-119 431.4 449 53.2
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 8.4e-119 431.4 442 55.0
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 7.1e-118 428.3 417 57.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 9.3e-118 427.9 441 53.1
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 9.3e-118 427.9 446 53.1
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.1e-117 426.8 455 52.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.5e-117 426.0 481 51.4
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.6e-117 425.6 447 53.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 6.0e-117 425.2 444 53.2
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-116 424.1 441 52.6
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.5e-115 420.6 442 52.3
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.2e-114 415.2 446 53.8
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 6.9e-113 411.8 491 48.3
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 6.9e-113 411.8 469 50.7
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 9.0e-113 411.4 449 51.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.2e-112 411.0 394 55.6
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.6e-112 409.8 437 54.7
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 2.9e-111 406.4 451 51.9
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 9.3e-110 401.4 456 49.8
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.7e-109 399.8 435 53.1
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.0e-108 397.9 288 68.1
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.0e-108 397.9 404 54.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.8e-108 397.1 417 54.4
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.3e-108 396.7 435 50.8
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.3e-108 396.7 442 51.4
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 6.7e-108 395.2 528 45.8
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.1e-107 394.4 397 55.4
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 5.6e-107 392.1 481 47.8
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 7.4e-107 391.7 445 50.6
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.8e-106 389.8 263 72.6
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.8e-106 389.0 449 51.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 8.1e-106 388.3 474 48.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.4e-105 386.7 423 53.0
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.3e-105 385.6 468 49.6
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 5.3e-105 385.6 371 55.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.2e-104 384.4 463 48.2
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 5.8e-104 382.1 454 48.7
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-103 380.9 411 52.3
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.9e-102 377.1 481 46.8
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 2.5e-102 376.7 434 51.6
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 7.9e-101 371.7 429 51.5
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 3.3e-99 366.3 382 53.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.5e-96 355.9 455 48.1
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 7.6e-96 355.1 287 59.9
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 8.4e-95 351.7 389 51.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.4e-94 350.9 410 47.6
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.3e-90 337.8 409 47.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 8.2e-90 335.1 264 63.6
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-87 328.2 380 51.3
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 6.5e-87 325.5 347 53.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.5e-86 322.4 508 40.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 3.0e-84 316.6 371 50.4
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.0e-83 313.9 449 41.9
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 4.3e-83 312.8 286 54.9
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 6.1e-77 292.4 172 76.7
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.5e-75 287.7 489 39.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.2e-74 282.0 372 48.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 9.1e-73 278.5 341 51.3
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.2e-71 273.9 822 29.0
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.6e-69 266.5 426 41.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 7.7e-64 248.8 225 54.2
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.6e-61 241.1 132 84.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.4e-60 238.0 416 41.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.5e-59 234.6 133 82.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-58 231.5 269 46.8
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 8.5e-55 218.8 340 43.5
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.3e-52 210.7 381 40.4
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 2.8e-50 203.8 375 34.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.1e-49 201.8 302 42.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 5.9e-48 196.1 284 41.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.0e-47 195.3 433 33.0
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.2e-40 171.8 308 34.4
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.7e-40 170.6 343 33.2
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-33 148.7 294 32.3
FAN14G1061 Fragaria x ananassa HOM05D002924 ORTHO05D003122 2.0e-32 144.4 77 97.4
FvH4_6g39780 Fragaria vesca HOM05D002924 ORTHO05D003122 6.0e-32 142.9 77 96.1
FAN02G2253 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.0e-32 142.9 77 96.1
RcHm_v2.0_Chr2g0153891 Rosa chinensis HOM05D002924 ORTHO05D003122 3.1e-28 130.6 99 69.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.4e-25 121.7 62 85.5
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 6.0e-24 116.3 80 68.8
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.6e-21 108.2 88 61.4
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.2e-19 102.1 69 71.0
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.2e-16 92.0 113 44.2
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.9e-14 84.7 41 90.2
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 6.8e-12 76.3 43 79.1
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-09 68.6 94 44.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.6e-08 65.1 48 62.5
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.1e-08 64.7 72 48.6
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 3.5e-08 63.9 44 68.2
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 9.6e-06 55.8 47 61.7


User provided reference genes

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