Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.6e-90 333.6 180 100.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.5e-87 324.7 180 97.8
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.9e-82 309.3 180 93.9
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 5.8e-79 297.7 180 92.8
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.8e-79 297.7 180 92.8
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 4.1e-64 248.4 189 77.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 9.4e-53 210.7 182 69.2
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 8.5e-46 187.6 180 66.1
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 6.8e-35 151.4 198 54.0
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.2e-34 150.6 197 54.3
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.8e-33 146.0 186 54.8
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 4.8e-33 145.2 159 56.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 6.3e-33 144.8 181 53.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.1e-32 144.1 200 51.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.4e-32 143.7 183 53.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.8e-32 143.3 191 53.4
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.8e-32 143.3 179 53.6
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 4.1e-32 142.1 130 62.3
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 9.1e-32 141.0 166 54.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-31 140.6 186 52.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.6e-31 140.2 161 52.2
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.7e-31 139.4 192 50.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.5e-31 139.0 99 75.8
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.5e-31 139.0 195 51.8
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.5e-31 139.0 186 52.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 4.5e-31 138.7 190 51.1
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 5.9e-31 138.3 191 49.7
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 7.7e-31 137.9 98 74.5
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 7.7e-31 137.9 98 74.5
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 7.7e-31 137.9 98 74.5
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 7.7e-31 137.9 200 49.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 7.7e-31 137.9 169 50.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.7e-31 137.9 186 51.1
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 7.7e-31 137.9 113 66.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.0e-30 137.5 99 75.8
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.0e-30 137.5 183 53.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.0e-30 137.5 190 49.5
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.3e-30 137.1 190 48.9
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.7e-30 136.7 200 51.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.7e-30 136.7 162 53.7
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.7e-30 136.7 190 51.1
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.3e-30 136.3 179 52.0
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.3e-30 136.3 155 55.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 2.9e-30 136.0 168 52.4
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.9e-30 136.0 123 62.6
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.9e-30 136.0 174 52.3
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.8e-30 135.6 166 51.8
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 3.8e-30 135.6 187 50.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 3.8e-30 135.6 190 49.5
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.8e-30 135.6 171 52.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 5.0e-30 135.2 187 49.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 5.0e-30 135.2 95 74.7
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 6.5e-30 134.8 173 51.4
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.9e-29 133.3 183 50.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.9e-29 133.3 102 71.6
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.9e-29 133.3 195 49.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.9e-29 133.3 191 48.2
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.2e-29 132.5 187 50.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.2e-29 132.5 189 49.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.2e-29 132.5 183 50.8
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 4.2e-29 132.1 164 53.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 4.2e-29 132.1 94 74.5
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 4.2e-29 132.1 94 74.5
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 4.2e-29 132.1 203 50.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 4.2e-29 132.1 174 52.3
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 5.5e-29 131.7 166 51.2
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.5e-29 131.7 186 52.2
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 5.5e-29 131.7 181 52.5
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.2e-29 131.3 200 48.5
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 7.2e-29 131.3 100 70.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 9.5e-29 131.0 178 50.0
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.6e-28 130.2 165 52.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.6e-28 130.2 181 51.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-28 129.8 188 48.4
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.1e-28 129.8 189 48.7
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 2.8e-28 129.4 136 58.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 2.8e-28 129.4 174 49.4
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 2.8e-28 129.4 131 58.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 3.6e-28 129.0 184 50.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.6e-28 129.0 184 50.0
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 4.7e-28 128.6 186 51.1
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 6.1e-28 128.3 93 72.0
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 8.0e-28 127.9 143 55.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.0e-27 127.5 152 52.0
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.4e-27 127.1 194 49.5
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.8e-27 126.7 195 48.2
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.3e-27 126.3 194 49.5
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.3e-27 126.3 184 50.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.0e-27 125.9 139 57.6
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 4.0e-27 125.6 180 48.3
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 8.8e-27 124.4 205 44.4
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.2e-26 124.0 98 65.3
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.0e-26 123.2 192 48.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.6e-26 122.9 188 46.8
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 3.4e-26 122.5 190 47.9
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.4e-26 122.1 175 49.1
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 4.4e-26 122.1 190 48.9
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 7.5e-26 121.3 191 47.1
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.3e-25 118.2 183 50.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.3e-25 117.9 183 49.7
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 2.4e-24 116.3 84 75.0
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.4e-24 115.2 188 44.1
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.2e-23 114.0 186 45.2
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 8.6e-22 107.8 84 67.9
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.9e-21 106.7 180 46.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.5e-21 106.3 218 40.8
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.2e-20 104.0 79 68.4
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.0e-19 100.9 82 64.6
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 4.0e-19 99.0 152 44.1
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.2e-18 97.4 96 53.1
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 4.4e-18 95.5 64 84.4
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.1e-16 90.9 127 44.9
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.8e-16 90.1 75 66.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.1e-16 89.0 88 52.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 9.2e-16 87.8 74 63.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.6e-15 87.0 124 43.5
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.7e-15 86.3 103 47.6
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.0e-14 82.8 88 48.9
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.3e-13 78.2 76 60.5
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.2e-12 75.1 116 45.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 6.8e-11 71.6 122 45.9
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.9e-11 71.2 63 68.3
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.9e-09 66.2 96 47.9
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.9e-09 65.5 103 32.0
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.1e-08 64.3 43 74.4
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.4e-08 63.2 78 47.4
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 3.2e-08 62.8 124 38.7
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.6e-07 58.9 115 26.1
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 6.0e-07 58.5 109 38.5
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 6.0e-07 58.5 137 40.1
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 6.6e-06 55.1 85 42.4


User provided reference genes

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