Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 4.1e-59 231.1 111 100.0
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.1e-59 231.1 111 100.0
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.1e-59 231.1 111 100.0
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.3e-56 221.5 111 95.5
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 7.6e-53 210.3 111 92.8
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.0e-49 198.4 110 89.1
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 3.9e-41 171.4 113 76.1
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 4.3e-40 167.9 120 74.2
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 2.8e-39 165.2 113 75.2
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 8.1e-39 163.7 115 74.8
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 3.2e-35 151.8 110 71.8
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 3.2e-35 151.8 115 68.7
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 5.4e-35 151.0 112 71.4
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 7.9e-34 147.1 111 68.5
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.3e-33 146.4 110 64.5
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 2.3e-33 145.6 110 68.2
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 1.1e-32 143.3 100 70.0
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.9e-32 142.5 108 71.3
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 2.5e-32 142.1 102 70.6
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 7.4e-32 140.6 108 68.5
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 9.6e-32 140.2 103 71.8
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 1.6e-31 139.4 110 60.9
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 2.8e-31 138.7 108 62.0
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.7e-31 138.3 67 89.6
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 6.2e-31 137.5 112 62.5
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 6.2e-31 137.5 111 61.3
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 8.1e-31 137.1 101 65.3
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 1.1e-30 136.7 111 63.1
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.4e-30 136.3 111 60.4
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 1.8e-30 136.0 111 63.1
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.4e-30 135.6 109 59.6
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 2.4e-30 135.6 112 61.6
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 3.1e-30 135.2 113 63.7
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 3.1e-30 135.2 113 63.7
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.1e-30 135.2 103 68.9
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 4.0e-30 134.8 112 64.3
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 5.3e-30 134.4 109 61.5
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 5.3e-30 134.4 116 62.1
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 6.9e-30 134.0 105 65.7
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.2e-29 133.3 109 66.1
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 1.2e-29 133.3 112 63.4
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 2.0e-29 132.5 99 65.7
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 2.6e-29 132.1 110 58.2
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 4.5e-29 131.3 115 60.9
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 9.9e-29 130.2 112 61.6
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 9.9e-29 130.2 108 62.0
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 9.9e-29 130.2 107 61.7
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.3e-28 129.8 99 64.6
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.7e-28 129.4 108 61.1
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 1.7e-28 129.4 108 63.9
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.7e-28 129.4 98 61.2
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 2.2e-28 129.0 102 65.7
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.9e-28 128.6 107 62.6
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 3.8e-28 128.3 102 62.7
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 4.9e-28 127.9 98 63.3
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.4e-28 127.5 110 58.2
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 6.4e-28 127.5 111 61.3
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 6.4e-28 127.5 101 60.4
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 8.4e-28 127.1 107 59.8
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.1e-27 126.7 107 59.8
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.4e-27 126.3 101 57.4
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 1.4e-27 126.3 109 58.7
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.9e-27 125.9 101 58.4
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.4e-27 125.6 110 57.3
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 3.2e-27 125.2 112 58.9
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 3.2e-27 125.2 112 58.0
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 4.2e-27 124.8 112 58.9
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 4.2e-27 124.8 67 83.6
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 5.5e-27 124.4 113 60.2
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 7.1e-27 124.0 103 60.2
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 7.1e-27 124.0 99 59.6
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 7.1e-27 124.0 116 53.4
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 7.1e-27 124.0 56 92.9
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 9.3e-27 123.6 99 58.6
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 9.3e-27 123.6 111 57.7
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 1.2e-26 123.2 111 57.7
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 1.6e-26 122.9 110 58.2
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 1.6e-26 122.9 107 61.7
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 2.1e-26 122.5 121 56.2
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 2.1e-26 122.5 102 62.7
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 2.7e-26 122.1 102 61.8
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.7e-26 122.1 113 54.9
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 2.7e-26 122.1 108 60.2
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 2.7e-26 122.1 112 57.1
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 3.5e-26 121.7 102 61.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 3.5e-26 121.7 102 61.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 3.5e-26 121.7 102 61.8
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 4.6e-26 121.3 103 56.3
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 4.6e-26 121.3 103 56.3
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 6.0e-26 120.9 56 89.3
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 6.0e-26 120.9 113 54.0
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 7.9e-26 120.6 105 57.1
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.9e-26 120.6 111 53.2
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 1.3e-25 119.8 96 61.5
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.3e-25 119.8 113 54.0
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.3e-25 119.8 101 54.5
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 1.8e-25 119.4 85 68.2
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 2.3e-25 119.0 92 63.0
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 6.7e-25 117.5 107 57.0
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 8.7e-25 117.1 54 90.7
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 8.7e-25 117.1 110 56.4
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 8.7e-25 117.1 105 59.0
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 1.1e-24 116.7 110 59.1
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 1.9e-24 115.9 111 58.6
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 5.6e-24 114.4 98 58.2
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 2.1e-23 112.5 52 92.3
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 3.7e-23 111.7 124 53.2
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 6.2e-23 110.9 112 54.5
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 8.2e-23 110.5 113 48.7
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 1.1e-22 110.2 111 54.1
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.8e-22 109.4 107 56.1
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 4.0e-22 108.2 111 54.1
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 5.3e-22 107.8 113 54.9
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 3.2e-19 98.6 81 59.3
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.2e-19 98.6 119 47.1
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 3.2e-19 98.6 50 78.0
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 3.2e-19 98.6 43 93.0
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 3.2e-19 98.6 50 76.0
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 9.3e-19 97.1 87 57.5
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.8e-17 92.8 85 49.4
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 4.3e-16 88.2 72 58.3
Prupe.1G131400 Prunus persica HOM05D003440 ORTHO05D003953 9.0e-14 80.5 47 76.6
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 7.6e-13 77.4 105 36.2
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 7.6e-13 77.4 105 36.2
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 1.3e-12 76.6 105 35.2
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 1.7e-12 76.3 69 49.3
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.8e-12 75.1 58 51.7
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 5.0e-12 74.7 85 41.2
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 5.0e-12 74.7 118 33.9
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 1.9e-11 72.8 102 44.1
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 5.5e-11 71.2 84 40.5
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 7.2e-11 70.9 105 40.0
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 9.4e-11 70.5 63 49.2
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 9.4e-11 70.5 115 34.8
Pp3c7_16400 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.1e-10 69.3 53 52.8
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 2.7e-10 68.9 48 56.2
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 3.6e-10 68.6 87 41.4
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 4.6e-10 68.2 106 34.0
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 4.6e-10 68.2 52 50.0
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 4.6e-10 68.2 115 34.8
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 4.6e-10 68.2 52 51.9
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 6.1e-10 67.8 55 49.1
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 7.9e-10 67.4 52 51.9
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 1.0e-09 67.0 81 43.2
Mapoly0005s0064 Marchantia polymorpha HOM05D003440 ORTHO05D003953 1.0e-09 67.0 52 57.7
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.0e-09 67.0 51 52.9
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 1.0e-09 67.0 53 49.1
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 1.4e-09 66.6 52 48.1
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 1.4e-09 66.6 111 34.2
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.4e-09 66.6 47 55.3
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.8e-09 66.2 111 34.2
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 2.3e-09 65.9 53 50.9
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 3.0e-09 65.5 123 34.1
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 3.0e-09 65.5 53 47.2
Pp3c13_1650 Physcomitrium patens HOM05D003440 ORTHO05D003953 3.0e-09 65.5 52 51.9
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 3.9e-09 65.1 104 34.6
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 3.9e-09 65.1 117 35.0
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 3.9e-09 65.1 53 47.2
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.9e-09 65.1 54 44.4
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 5.1e-09 64.7 80 41.2
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 6.7e-09 64.3 52 53.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 6.7e-09 64.3 52 53.8
Pp3c3_1170 Physcomitrium patens HOM05D003440 ORTHO05D003953 1.1e-08 63.5 52 50.0
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 2.5e-08 62.4 56 46.4
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 3.3e-08 62.0 54 48.1
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 7.4e-08 60.8 115 35.7
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 7.4e-08 60.8 102 30.4
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 9.7e-08 60.5 58 41.4
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 1.7e-07 59.7 102 35.3
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.7e-07 59.7 53 49.1
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 2.2e-07 59.3 50 50.0
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 4.8e-07 58.2 102 33.3
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.1e-06 57.0 45 48.9
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.4e-06 56.6 50 42.0
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 1.8e-06 56.2 94 34.0
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 2.4e-06 55.8 111 29.7
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 3.1e-06 55.5 50 40.0
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 4.1e-06 55.1 104 34.6


User provided reference genes

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