Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.1e-81 305.1 155 100.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.5e-80 301.2 153 99.3
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.5e-80 301.2 154 98.7
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-79 299.7 153 98.7
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.9e-79 298.1 155 95.5
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.5e-78 296.2 153 98.7
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.3e-70 268.5 155 87.1
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.1e-69 265.8 155 85.8
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.4e-68 263.1 155 83.9
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.4e-68 263.1 155 83.9
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.3e-68 262.3 155 83.9
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 2.3e-68 262.3 155 83.9
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 8.9e-68 260.4 154 83.1
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.2e-67 260.0 155 83.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.5e-67 259.6 155 83.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.8e-67 257.7 155 81.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-66 255.8 155 82.6
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 3.7e-66 255.0 155 80.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.7e-66 255.0 155 81.9
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.9e-66 254.6 150 83.3
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 4.9e-66 254.6 155 80.6
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 6.4e-66 254.2 155 79.4
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 82.4
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 81.7
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.4e-65 253.1 155 80.6
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 82.4
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.4e-65 253.1 155 80.6
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.9e-65 252.7 155 81.3
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.9e-65 252.7 155 80.6
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 3.2e-65 251.9 153 82.4
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 3.2e-65 251.9 155 78.7
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.2e-65 251.9 153 81.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 4.1e-65 251.5 155 81.9
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 4.1e-65 251.5 155 80.6
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 5.4e-65 251.1 155 80.6
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.0e-65 250.8 155 80.6
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 7.0e-65 250.8 155 78.1
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-64 250.0 155 80.6
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 152 80.9
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 155 79.4
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.2e-64 250.0 155 81.3
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 2.1e-64 249.2 155 80.0
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.7e-64 248.8 155 78.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.7e-64 248.8 153 80.4
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.7e-64 248.8 155 80.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 3.5e-64 248.4 155 78.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 79.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 6.0e-64 247.7 155 77.4
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 7.8e-64 247.3 155 78.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 7.8e-64 247.3 152 80.3
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 77.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.0e-63 246.9 152 80.9
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 79.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.0e-63 246.9 155 76.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.0e-63 246.9 152 80.3
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-63 246.5 152 77.6
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.3e-63 246.5 143 82.5
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-63 246.5 152 77.6
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.3e-63 246.5 155 78.1
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 78.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 79.7
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.3e-63 245.7 155 80.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.3e-63 245.7 155 77.4
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.0e-63 245.4 152 80.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 3.0e-63 245.4 152 78.9
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.9e-63 245.0 155 78.1
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.9e-63 245.0 153 79.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 3.9e-63 245.0 153 79.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.1e-63 244.6 145 80.0
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 8.6e-63 243.8 155 78.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 8.6e-63 243.8 155 76.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.1e-62 243.4 155 76.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.5e-62 243.0 145 81.4
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.5e-62 243.0 153 76.5
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 2.5e-62 242.3 153 77.8
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.5e-62 242.3 155 78.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.3e-62 241.9 152 77.6
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.3e-62 241.9 153 77.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.6e-61 239.6 155 73.5
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.1e-61 239.2 154 76.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.8e-61 238.8 155 76.1
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.7e-61 238.0 155 73.5
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 4.7e-61 238.0 155 72.9
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.7e-61 238.0 155 77.4
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 4.7e-61 238.0 154 77.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 8.1e-61 237.3 155 76.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.4e-60 236.5 153 77.1
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.4e-60 236.5 155 75.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 74.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 4.0e-60 235.0 155 72.3
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 8.9e-60 233.8 152 77.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.2e-59 233.4 153 76.5
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.0e-59 232.6 155 73.5
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.8e-59 231.1 155 71.6
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 7.5e-59 230.7 153 75.2
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.3e-58 229.9 152 74.3
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 2.2e-58 229.2 153 77.1
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 2.2e-58 229.2 152 75.0
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 8.3e-58 227.3 151 74.8
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 8.3e-58 227.3 149 71.1
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.4e-57 225.7 146 72.6
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 4.1e-57 224.9 155 71.6
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 7.1e-57 224.2 155 69.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 9.2e-57 223.8 155 69.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 67.1
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 67.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 4.6e-56 221.5 155 65.8
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 6.0e-56 221.1 152 69.1
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.0e-55 220.3 150 75.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.7e-55 219.5 155 68.4
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.9e-55 218.4 155 68.4
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 8.6e-55 217.2 155 67.1
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.5e-54 216.5 152 73.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-54 216.1 152 66.4
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.9e-54 216.1 152 65.8
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.9e-54 216.1 153 68.0
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.5e-54 215.7 152 65.8
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 5.6e-54 214.5 154 64.3
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-53 213.4 153 64.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.2e-53 213.4 152 66.4
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.6e-53 213.0 152 65.1
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 7.6e-51 204.1 170 60.0
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.1e-49 200.3 149 61.1
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.1e-48 196.1 145 60.0
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.5e-48 195.3 145 67.6
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.8e-48 194.1 122 77.9
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 7.8e-48 194.1 155 61.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.3e-47 192.6 121 75.2
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 3.9e-47 191.8 124 75.8
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-45 186.4 152 62.5
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.4e-43 178.7 149 56.4
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.8e-42 175.3 113 73.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 3.2e-41 172.2 130 62.3
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 3.5e-40 168.7 113 69.9
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.3e-38 161.8 183 52.5
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-34 149.8 95 78.9
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.7e-34 149.8 151 49.7
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.0e-32 141.4 124 61.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 8.7e-31 137.5 150 46.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.1e-28 129.0 77 77.9
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.9e-28 127.9 80 77.5
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.0e-28 127.5 100 65.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.3e-26 123.6 74 82.4
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.9e-25 119.8 83 75.9
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-24 116.7 74 78.4
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-24 116.3 69 76.8
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 3.5e-24 115.5 77 67.5
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.0e-24 114.8 78 76.9
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.8e-23 113.2 89 67.4
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-23 112.8 67 76.1
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.1e-20 102.4 149 39.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.8e-12 76.6 55 78.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.8e-07 60.1 67 55.2


User provided reference genes

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