Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4273 Fragaria x ananassa HOM05D002488 ORTHO05D002613 6.0e-39 163.7 82 100.0
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 4.9e-33 144.1 81 90.1
FAN13G0176 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.2e-32 141.4 82 87.8
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 2.1e-28 128.6 81 81.5
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 6.2e-28 127.1 82 84.1
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 6.9e-27 123.6 81 80.2
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 6.9e-27 123.6 81 80.2
FAN23G0169 Fragaria x ananassa HOM05D002488 ORTHO05D002613 9.3e-24 113.2 67 85.1
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 3.5e-23 111.3 82 72.0
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 1.9e-13 79.0 88 52.3
FvH4_5g35210 Fragaria vesca HOM05D002488 ORTHO05D002613 2.1e-12 75.5 84 57.1
FAN08G2097 Fragaria x ananassa HOM05D002488 ORTHO05D002613 2.1e-12 75.5 84 57.1
FAN13G0218 Fragaria x ananassa HOM05D002488 ORTHO05D002613 2.1e-12 75.5 84 57.1
FAN18G1955 Fragaria x ananassa HOM05D002488 ORTHO05D002613 2.1e-12 75.5 84 57.1
CAN.G338.29 Capsicum annuum HOM05D002488 ORTHO05D002613 1.1e-11 73.2 82 46.3
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 1.4e-11 72.8 83 53.0
FAN04G2264 Fragaria x ananassa HOM05D002596 ORTHO05D002851 2.4e-11 72.0 39 84.6
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 1.2e-10 69.7 81 46.9
Ca_14275_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 3.4e-10 68.2 81 48.1
Lj1g0012260 Lotus japonicus HOM05D002488 ORTHO05D002613 3.4e-10 68.2 81 49.4
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 4.5e-10 67.8 81 46.9
Nitab4.5_0003703g0050 Nicotiana tabacum HOM05D002488 ORTHO05D002613 4.5e-10 67.8 84 48.8
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 4.5e-10 67.8 81 44.4
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 5.8e-10 67.4 81 44.4
MELO3C026254.2 Cucumis melo HOM05D002488 ORTHO05D002613 1.0e-09 66.6 92 45.7
Nitab4.5_0001793g0070 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.3e-09 66.2 84 46.4
Ca_16132_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 2.2e-09 65.5 80 45.0
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 2.2e-09 65.5 83 44.6
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 2.2e-09 65.5 81 43.2
Lalb_Chr23g0273331 Lupinus albus HOM05D002488 ORTHO05D002613 3.8e-09 64.7 84 45.2
Psat4g060240 Pisum sativum HOM05D002488 ORTHO05D002613 3.8e-09 64.7 86 44.2
Solyc03g112270.3 Solanum lycopersicum HOM05D002488 ORTHO05D002613 5.0e-09 64.3 81 42.0
Sopen03g031370 Solanum pennellii HOM05D002488 ORTHO05D002613 5.0e-09 64.3 81 42.0
Sc04g0001530 Simmondsia chinensis HOM05D002488 ORTHO05D002613 6.5e-09 63.9 86 45.3
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 1.1e-08 63.2 83 47.0
AUR62028730 Chenopodium quinoa HOM05D002488 ORTHO05D002613 1.4e-08 62.8 81 42.0
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 1.4e-08 62.8 81 44.4
Nitab4.5_0000025g0310 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.4e-08 62.8 82 43.9
MSTRG.11493 Avicennia marina HOM05D002488 ORTHO05D002613 1.9e-08 62.4 81 40.7
Glyma.05G041400 Glycine max HOM05D002488 ORTHO05D002613 1.9e-08 62.4 81 43.2
Ah.02g110840 Amaranthus hybridus HOM05D002488 ORTHO05D002613 2.5e-08 62.0 85 40.0
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 2.5e-08 62.0 82 46.3
Cpa.g.sc159.31 Carica papaya HOM05D002488 ORTHO05D002613 3.2e-08 61.6 81 44.4
EL10Ac5g10659 Beta vulgaris HOM05D002488 ORTHO05D002613 4.2e-08 61.2 88 39.8
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 4.2e-08 61.2 80 43.8
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 4.2e-08 61.2 81 46.9
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 5.5e-08 60.8 82 46.3
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 5.5e-08 60.8 81 43.2
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 7.1e-08 60.5 88 44.3
SGA_v2.0_scaffold25G10801 Striga asiatica HOM05D002488 ORTHO05D002613 9.3e-08 60.1 80 41.2
Cc04_g11610 Coffea canephora HOM05D002488 ORTHO05D002613 1.2e-07 59.7 86 41.9
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 1.2e-07 59.7 84 42.9
TPR.G21814 Trifolium pratense HOM05D002488 ORTHO05D002613 1.2e-07 59.7 83 44.6
TPR.G37454 Trifolium pratense HOM05D002488 ORTHO05D002613 1.2e-07 59.7 81 44.4
HanXRQChr05g0154171 Helianthus annuus HOM05D002488 ORTHO05D002613 1.6e-07 59.3 81 38.3
Peaxi162Scf00801g00213 Petunia axillaris HOM05D002488 ORTHO05D002613 1.6e-07 59.3 82 45.1
arahy.Tifrunner.gnm1.ann1.A1CNSV Arachis hypogaea HOM05D002488 ORTHO05D002613 2.7e-07 58.5 86 41.9
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 2.7e-07 58.5 86 41.9
Nitab4.5_0001566g0020 Nicotiana tabacum HOM05D002488 ORTHO05D002613 2.7e-07 58.5 82 42.7
Peaxi162Scf00089g01345 Petunia axillaris HOM05D002488 ORTHO05D002613 2.7e-07 58.5 82 41.5
CSS0018025 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 3.5e-07 58.2 83 42.2
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 3.5e-07 58.2 90 43.3
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 3.5e-07 58.2 86 41.9
Dinv01306 Davidia involucrata HOM05D002488 ORTHO05D002613 3.5e-07 58.2 85 44.7
Migut.O00154 Erythranthe guttata HOM05D002488 ORTHO05D002613 3.5e-07 58.2 84 42.9
Hma1.2p1_2227F.1_g317490 Hydrangea macrophylla HOM05D002488 ORTHO05D002613 3.5e-07 58.2 82 42.7
Medtr4g105010 Medicago truncatula HOM05D002488 ORTHO05D002613 3.5e-07 58.2 80 40.0
CSS0031964 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 4.6e-07 57.8 83 42.2
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 4.6e-07 57.8 85 44.7
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 4.6e-07 57.8 85 42.4
PSO339G4325 Papaver somniferum HOM05D002488 ORTHO05D002613 4.6e-07 57.8 96 36.5
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 6.1e-07 57.4 86 47.7
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 6.1e-07 57.4 81 40.7
AUR62008148 Chenopodium quinoa HOM05D002488 ORTHO05D002613 7.9e-07 57.0 81 39.5
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 7.9e-07 57.0 89 43.8
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 7.9e-07 57.0 81 43.2
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 7.9e-07 57.0 81 39.5
CiPaw.11G020700 Carya illinoinensis HOM05D002488 ORTHO05D002613 1.3e-06 56.2 86 41.9
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 1.3e-06 56.2 81 43.2
THA.LOC104816567 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 1.3e-06 56.2 86 37.2
Ah.11g051140 Amaranthus hybridus HOM05D002488 ORTHO05D002613 1.8e-06 55.8 86 38.4
unitig_8.g3066 Utricularia gibba HOM05D002488 ORTHO05D002613 1.8e-06 55.8 81 38.3
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 2.3e-06 55.5 86 39.5
VMungo1215G1015 Vigna mungo HOM05D002488 ORTHO05D002613 2.3e-06 55.5 86 33.7
Psat0s3170g0040 Pisum sativum HOM05D002488 ORTHO05D002613 3.0e-06 55.1 81 40.7
RcHm_v2.0_Chr7g0236341 Rosa chinensis HOM05D002488 ORTHO05D002613 3.0e-06 55.1 82 48.8
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 3.9e-06 54.7 88 40.9
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 3.9e-06 54.7 86 39.5
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 3.9e-06 54.7 89 38.2
Lsat_1_v5_gn_1_27821 Lactuca sativa HOM05D002488 ORTHO05D002613 3.9e-06 54.7 84 39.3
SGA_v2.0_scaffold90G27842 Striga asiatica HOM05D002488 ORTHO05D002613 3.9e-06 54.7 81 38.3
HPP92_021378 Vanilla planifolia HOM05D002488 ORTHO05D002613 3.9e-06 54.7 86 38.4
arahy.Tifrunner.gnm1.ann1.9WU370 Arachis hypogaea HOM05D002488 ORTHO05D002613 5.1e-06 54.3 85 38.8
A05p38020 Brassica napus HOM05D002488 ORTHO05D002613 5.1e-06 54.3 80 36.2
BraA05t22593Z Brassica rapa HOM05D002488 ORTHO05D002613 5.1e-06 54.3 80 36.2
Carub.0003s1066 Capsella rubella HOM05D002488 ORTHO05D002613 5.1e-06 54.3 80 35.0
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 5.1e-06 54.3 81 33.3
Medtr3g076990 Medicago truncatula HOM05D002488 ORTHO05D002613 5.1e-06 54.3 84 40.5
SalBow5G3101 Salvia bowleyana HOM05D002488 ORTHO05D002613 6.7e-06 53.9 81 38.3
SalBow5G4499 Salvia bowleyana HOM05D002488 ORTHO05D002613 6.7e-06 53.9 81 38.3
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 8.7e-06 53.5 88 40.9
DCAR_021585 Daucus carota HOM05D002488 ORTHO05D002613 8.7e-06 53.5 84 36.9
PSO017G5698 Papaver somniferum HOM05D002488 ORTHO05D002613 8.7e-06 53.5 96 37.5
Sp3g09590 Schrenkiella parvula HOM05D002488 ORTHO05D002613 8.7e-06 53.5 88 35.2
Sc10g0010200 Simmondsia chinensis HOM05D002488 ORTHO05D002613 8.7e-06 53.5 81 39.5


User provided reference genes

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