Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 7.9e-200 700.3 364 100.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.2e-193 677.9 367 97.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.6e-192 674.5 376 94.4
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 6.3e-157 557.8 389 77.9
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.0e-138 497.3 333 79.3
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 3.1e-135 485.7 390 67.7
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 2.3e-127 459.5 245 96.3
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 3.3e-121 439.1 374 65.0
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.6e-104 383.6 367 58.3
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 1.6e-104 383.6 352 60.2
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.1e-104 383.3 364 59.9
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 9.3e-100 367.9 359 56.0
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 2.7e-99 366.3 353 57.2
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 5.6e-97 358.6 353 55.2
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.3e-96 357.5 345 57.1
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.8e-95 353.6 357 59.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.0e-95 352.4 348 55.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 3.4e-94 349.4 365 55.9
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.4e-92 344.0 345 56.5
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.9e-92 343.6 345 56.5
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.6e-91 340.5 344 54.7
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.0e-90 337.8 375 52.5
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.9e-90 335.9 345 53.9
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.9e-89 333.6 341 54.8
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.5e-89 333.2 352 54.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.3e-89 332.8 343 56.3
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 3.3e-89 332.8 367 52.6
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 5.7e-89 332.0 336 55.1
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 7.4e-89 331.6 342 52.9
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 9.6e-89 331.3 343 56.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.6e-88 330.5 348 54.3
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 6.2e-88 328.6 347 55.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 8.2e-88 328.2 352 55.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 8.2e-88 328.2 343 55.7
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.4e-87 326.6 346 52.9
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 3.1e-87 326.2 353 53.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 3.1e-87 326.2 348 53.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.3e-85 320.9 352 51.4
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.8e-85 319.3 356 53.1
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.4e-84 317.4 352 52.3
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.2e-83 314.3 348 51.4
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 3.5e-83 312.8 347 52.2
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.8e-82 310.5 355 48.7
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 5.1e-82 308.9 327 53.2
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.3e-81 305.8 347 49.3
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 5.7e-81 305.4 345 49.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 9.7e-81 304.7 350 48.6
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.6e-80 303.9 343 51.6
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 4.8e-80 302.4 339 51.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 6.3e-80 302.0 396 47.2
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 8.2e-80 301.6 347 51.6
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 3.8e-77 292.7 353 49.9
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 3.8e-77 292.7 366 48.1
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.5e-77 292.0 351 47.3
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 8.5e-77 291.6 344 52.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 2.5e-76 290.0 368 47.8
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 3.6e-75 286.2 348 51.4
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.4e-74 284.3 322 52.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.3e-74 283.5 322 51.6
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 3.0e-74 283.1 344 47.4
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 3.3e-73 279.6 327 49.8
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 4.3e-73 279.3 320 50.0
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 9.7e-73 278.1 342 48.5
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.3e-72 277.7 328 49.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.3e-72 277.7 353 46.2
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 4.8e-72 275.8 322 49.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.8e-71 273.9 387 46.5
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 3.1e-71 273.1 340 46.8
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 4.1e-71 272.7 325 48.6
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 6.9e-71 271.9 327 48.9
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 9.1e-71 271.6 383 45.2
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.5e-70 270.8 328 50.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 5.9e-70 268.9 333 47.4
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 7.7e-70 268.5 325 48.6
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-69 268.1 330 47.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.0e-69 268.1 330 48.5
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.9e-69 266.5 329 48.6
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 8.5e-69 265.0 346 44.8
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.2e-68 263.1 333 47.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.2e-67 261.2 344 45.3
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.6e-67 260.8 355 45.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.6e-67 260.8 325 48.3
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 7.9e-67 258.5 336 47.6
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.0e-66 258.1 329 47.7
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.0e-66 258.1 309 46.6
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.7e-64 250.8 312 43.9
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 8.2e-64 248.4 330 46.7
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 4.1e-63 246.1 365 43.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.3e-61 241.1 386 40.4
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.1e-60 238.0 454 37.0
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.5e-60 236.9 302 43.0
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 6.1e-59 232.3 389 40.6
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 3.0e-58 229.9 343 42.0
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.1e-57 228.0 346 42.2
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.5e-57 227.6 286 44.4
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.7e-56 224.2 337 40.4
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.2e-56 223.8 345 42.6
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.5e-54 216.1 207 57.0
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 5.9e-54 215.7 368 38.9
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-53 213.8 295 42.0
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 7.2e-52 208.8 343 36.2
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.2e-51 208.0 271 45.8
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 4.7e-51 206.1 306 41.2
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.4e-50 204.5 261 46.0
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 4.8e-48 196.1 329 40.7
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.8e-47 194.1 186 57.0
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 3.5e-46 189.9 368 34.2
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.1e-44 184.9 354 36.7
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.5e-44 184.5 209 50.7
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.9e-44 184.1 303 41.3
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.2e-44 183.0 198 49.0
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.2e-43 181.4 341 37.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.8e-42 177.6 306 36.9
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 262 42.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 262 42.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.8e-40 170.2 262 42.7
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.2e-38 164.9 246 40.2
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.9e-36 157.5 217 44.7
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 7.2e-36 155.6 250 41.6
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 2.6e-33 147.1 220 40.9
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.7e-32 144.4 294 35.4
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 3.7e-32 143.3 120 58.3
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 3.9e-29 133.3 198 42.4
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.5e-28 131.3 174 43.7
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 2.7e-22 110.5 154 46.1
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 8.6e-21 105.5 94 66.0
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.5e-20 104.8 385 27.3
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.9e-20 104.4 403 25.6
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 8.1e-19 99.0 112 40.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 8.1e-19 99.0 91 54.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 4.0e-18 96.7 110 44.5
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 1.4e-15 88.2 260 28.1
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.9e-13 80.1 65 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 8.6e-13 79.0 203 25.1
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.5e-12 78.2 65 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.3e-08 65.1 387 22.2
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 1.1e-07 62.0 139 35.3
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.4e-07 60.8 64 56.2
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.6e-06 58.2 99 35.4
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 6.0e-06 56.2 44 65.9


User provided reference genes

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