Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g51480 Fragaria vesca HOM05D007622 ORTHO05D009409 5.5e-59 230.7 113 100.0
FAN02G2753 Fragaria x ananassa HOM05D007622 ORTHO05D009409 5.5e-59 230.7 113 100.0
FAN09G4241 Fragaria x ananassa HOM05D007622 ORTHO05D009409 5.5e-59 230.7 113 100.0
FAN14G0072 Fragaria x ananassa HOM05D007622 ORTHO05D009409 5.5e-59 230.7 113 100.0
FAN05G3531 Fragaria x ananassa HOM05D007622 ORTHO05D009409 5.2e-57 224.2 113 96.5
RcHm_v2.0_Chr2g0173121 Rosa chinensis HOM05D007622 ORTHO05D009409 6.7e-57 223.8 113 95.6
Prupe.3G292200 Prunus persica HOM05D007622 ORTHO05D009409 3.2e-51 204.9 113 86.7
MD17G1026500 Malus domestica HOM05D007622 ORTHO05D009409 9.4e-51 203.4 113 85.8
Sed0017852 Sechium edule HOM05D007622 ORTHO05D009409 2.7e-45 185.3 115 78.3
ClCG09G019280 Citrullus lanatus HOM05D007622 ORTHO05D009409 4.5e-45 184.5 115 77.4
QL02p074426 Quercus lobata HOM05D007622 ORTHO05D009409 4.5e-45 184.5 116 79.3
MELO3C021583.2 Cucumis melo HOM05D007622 ORTHO05D009409 2.2e-44 182.2 116 75.9
Potri.001G344700 Populus trichocarpa HOM05D007622 ORTHO05D009409 2.2e-44 182.2 113 77.9
CsaV3_5G027110 Cucumis sativus L. HOM05D007622 ORTHO05D009409 2.9e-44 181.8 116 75.9
Eucgr.J02247 Eucalyptus grandis HOM05D007622 ORTHO05D009409 5.0e-44 181.0 113 79.6
PGR083G1671 Punica granatum HOM05D007622 ORTHO05D009409 4.2e-43 177.9 115 77.4
CANSAT64G0926 Cannabis sativa HOM05D007622 ORTHO05D009409 5.5e-43 177.6 113 75.2
Dinv35108 Davidia involucrata HOM05D007622 ORTHO05D009409 9.4e-43 176.8 98 84.7
TWI36G0684 Tripterygium wilfordii HOM05D007622 ORTHO05D009409 9.4e-43 176.8 113 76.1
CiPaw.04G028800 Carya illinoinensis HOM05D007622 ORTHO05D009409 1.6e-42 176.0 115 73.9
GSVIVG01032401001 Vitis vinifera HOM05D007622 ORTHO05D009409 3.6e-42 174.9 113 77.9
Ciclev10017228m.g Citrus clementina HOM05D007622 ORTHO05D009409 4.7e-42 174.5 116 74.1
Sabra16G0223800 Salix brachista HOM05D007622 ORTHO05D009409 4.7e-42 174.5 113 75.2
Potri.017G071300 Populus trichocarpa HOM05D007622 ORTHO05D009409 6.1e-42 174.1 113 73.5
Manes.15G151000 Manihot esculenta HOM05D007622 ORTHO05D009409 4.0e-41 171.4 113 74.3
COL.COLO4_29125 Corchorus olitorius HOM05D000285 ORTHO05D009409 1.5e-40 169.5 105 78.1
SGA_v2.0_scaffold195G40817 Striga asiatica HOM05D007622 ORTHO05D009409 2.0e-40 169.1 113 74.3
HanXRQChr09g0255201 Helianthus annuus HOM05D007622 ORTHO05D009409 4.4e-40 167.9 99 78.8
Sc03g0007350 Simmondsia chinensis HOM05D007622 ORTHO05D009409 4.4e-40 167.9 96 83.3
Nitab4.5_0003318g0060 Nicotiana tabacum HOM05D007622 ORTHO05D009409 9.8e-40 166.8 114 74.6
Peaxi162Scf00129g01661 Petunia axillaris HOM05D007622 ORTHO05D009409 9.8e-40 166.8 114 74.6
Thhalv10027995m.g Eutrema salsugineum HOM05D007622 ORTHO05D009409 1.3e-39 166.4 115 73.9
Gohir.D07G230100 Gossypium hirsutum HOM05D007622 ORTHO05D009409 1.7e-39 166.0 116 72.4
Gorai.001G265400 Gossypium raimondii HOM05D007622 ORTHO05D009409 1.7e-39 166.0 116 72.4
Oeu013968.1 Olea europaea HOM05D007622 ORTHO05D009409 1.7e-39 166.0 101 77.2
Gohir.A07G223400 Gossypium hirsutum HOM05D007622 ORTHO05D009409 2.2e-39 165.6 116 71.6
Nn4g22626 Nelumbo nucifera HOM05D007622 ORTHO05D009409 2.2e-39 165.6 99 80.8
Lsat_1_v5_gn_4_184040 Lactuca sativa HOM05D007622 ORTHO05D009409 2.8e-39 165.2 96 80.2
AL7G49320 Arabidopsis lyrata HOM05D007622 ORTHO05D009409 3.7e-39 164.9 116 70.7
Duzib147G0488 Durio zibethinus HOM05D007622 ORTHO05D009409 3.7e-39 164.9 97 80.4
CAN.G473.12 Capsicum annuum HOM05D007622 ORTHO05D009409 4.8e-39 164.5 114 72.8
SalBow1G5210 Salvia bowleyana HOM05D007622 ORTHO05D009409 4.8e-39 164.5 96 79.2
MSTRG.15530 Avicennia marina HOM05D007622 ORTHO05D009409 6.3e-39 164.1 101 79.2
Ah.03g137040 Amaranthus hybridus HOM05D007622 ORTHO05D009409 8.3e-39 163.7 102 75.5
Aqoxy5G03768 Aquilegia oxysepala HOM05D007622 ORTHO05D009409 8.3e-39 163.7 115 74.8
DCAR_001440 Daucus carota HOM05D007622 ORTHO05D009409 8.3e-39 163.7 96 80.2
PGSC0003DMG400012602 Solanum tuberosum HOM05D007622 ORTHO05D009409 8.3e-39 163.7 114 73.7
Solyc02g093350.3 Solanum lycopersicum HOM05D007622 ORTHO05D009409 1.1e-38 163.3 97 80.4
arahy.Tifrunner.gnm1.ann1.QKG8XN Arachis hypogaea HOM05D007622 ORTHO05D009409 1.4e-38 162.9 119 69.7
Nitab4.5_0001860g0100 Nicotiana tabacum HOM05D007622 ORTHO05D009409 1.4e-38 162.9 114 73.7
Thecc.04G017800 Theobroma cacao HOM05D007622 ORTHO05D009409 1.4e-38 162.9 116 73.3
Sp7g01380 Schrenkiella parvula HOM05D007622 ORTHO05D009409 1.8e-38 162.5 116 71.6
THA.LOC104805368 Tarenaya hassleriana HOM05D007622 ORTHO05D009409 1.8e-38 162.5 117 70.1
Actinidia16945 Actinidia chinensis HOM05D007622 ORTHO05D009409 4.1e-38 161.4 96 79.2
Cc07_g01640 Coffea canephora HOM05D007622 ORTHO05D009409 4.1e-38 161.4 98 76.5
Sopen02g037920 Solanum pennellii HOM05D007622 ORTHO05D009409 4.1e-38 161.4 97 79.4
AT5G40500 Arabidopsis thaliana HOM05D007622 ORTHO05D009409 5.4e-38 161.0 98 77.6
TAR629G2574 Trochodendron aralioides HOM05D007622 ORTHO05D009409 7.0e-38 160.6 97 81.4
Atru.chr6.2402 Acer truncatum HOM05D007622 ORTHO05D009409 1.2e-37 159.8 114 73.7
BcaB06g27524 Brassica carinata HOM05D007622 ORTHO05D009409 1.6e-37 159.5 98 77.6
A04p13550 Brassica napus HOM05D000285 ORTHO05D009409 1.6e-37 159.5 98 77.6
C04p47330 Brassica napus HOM05D000285 ORTHO05D009409 1.6e-37 159.5 98 77.6
BolC4t26334H Brassica oleracea HOM05D000285 ORTHO05D009409 1.6e-37 159.5 98 77.6
BraA04t17014Z Brassica rapa HOM05D000285 ORTHO05D009409 1.6e-37 159.5 98 77.6
CSS0000151 Camellia sinensis var. sinensis HOM05D007622 ORTHO05D009409 2.0e-37 159.1 126 69.0
CSS0044104 Camellia sinensis var. sinensis HOM05D007622 ORTHO05D009409 2.0e-37 159.1 126 69.0
CDE09G0341 Ceratophyllum demersum HOM05D007622 ORTHO05D009409 2.0e-37 159.1 96 76.0
PSO111G0004 Papaver somniferum HOM05D007622 ORTHO05D009409 2.0e-37 159.1 116 70.7
Lalb_Chr24g0402871 Lupinus albus HOM05D007622 ORTHO05D009409 2.7e-37 158.7 96 78.1
Hund12976 Selenicereus undatus HOM05D007622 ORTHO05D009409 3.5e-37 158.3 96 74.0
CDE02G3805 Ceratophyllum demersum HOM05D007622 ORTHO05D009409 5.9e-37 157.5 96 75.0
EL10Ac6g14084 Beta vulgaris HOM05D007622 ORTHO05D009409 2.2e-36 155.6 96 72.9
Glyma.16G070800 Glycine max HOM05D007622 ORTHO05D009409 2.2e-36 155.6 99 75.8
Glyma.19G060600 Glycine max HOM05D007622 ORTHO05D009409 2.2e-36 155.6 99 75.8
Migut.H00074 Erythranthe guttata HOM05D007622 ORTHO05D009409 5.0e-36 154.5 96 75.0
Phvul.008G153900 Phaseolus vulgaris HOM05D007622 ORTHO05D009409 1.1e-35 153.3 116 65.5
Carub.0007s3502 Capsella rubella HOM05D007622 ORTHO05D009409 1.5e-35 152.9 116 69.0
ECA232G2324 Erigeron canadensis HOM05D007622 ORTHO05D009409 1.9e-35 152.5 97 74.2
Medtr7g033680 Medicago truncatula HOM05D007622 ORTHO05D009409 7.2e-35 150.6 126 63.5
Zm00001eb425130 Zea mays HOM05D007622 ORTHO05D009409 1.2e-34 149.8 120 64.2
arahy.Tifrunner.gnm1.ann1.30MLP8 Arachis hypogaea HOM05D007622 ORTHO05D009409 1.6e-34 149.4 129 62.8
PSO067G0063 Papaver somniferum HOM05D007622 ORTHO05D009409 8.0e-34 147.1 119 66.4
Duzib264G0071 Durio zibethinus HOM05D007622 ORTHO05D009409 1.0e-33 146.7 94 76.6
Lj1g0022477 Lotus japonicus HOM05D007622 ORTHO05D009409 6.8e-33 144.1 80 83.8
Os04g0482900 Oryza sativa ssp. japonica HOM05D007622 ORTHO05D009409 3.4e-32 141.7 106 65.1
TPR.G1098 Trifolium pratense HOM05D007622 ORTHO05D009409 7.5e-32 140.6 87 77.0
SEGI_15693 Sequoiadendron giganteum HOM05D007622 ORTHO05D009409 1.1e-30 136.7 98 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2472 Anthoceros agrestis HOM05D007622 ORTHO05D009409 2.9e-28 128.6 107 54.2
Aa31LG9G1100 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.5e-27 126.3 96 65.6
Pp3c12_19400 Physcomitrium patens HOM05D007622 ORTHO05D009409 1.6e-26 122.9 102 54.9
SMO367G1081 Selaginella moellendorffii HOM05D007622 ORTHO05D009409 4.0e-25 118.2 93 52.7
vmacro18290 Vaccinium macrocarpon HOM05D007622 ORTHO05D009409 1.2e-24 116.7 93 64.5
TAR371G1070 Trochodendron aralioides HOM05D007622 ORTHO05D009409 2.6e-24 115.5 63 84.1
Rhsim08G0048800 Rhododendron simsii HOM05D007622 ORTHO05D009409 1.3e-23 113.2 83 68.7
CBR_g34193 Chara braunii HOM05D007622 ORTHO05D009409 1.8e-22 109.4 100 52.0
MD09G1025400 Malus domestica HOM05D007622 ORTHO05D009409 1.7e-20 102.8 60 83.3
Psat3g166480 Pisum sativum HOM05D007622 ORTHO05D009409 5.0e-20 101.3 64 76.6
Cre12.g498700 Chlamydomonas reinhardtii HOM05D007622 ORTHO05D009409 2.0e-13 79.3 77 44.2
PRCOL_00004665 Prasinoderma coloniale HOM05D007622 ORTHO05D009409 9.5e-11 70.5 92 31.5
vmacro18289 Vaccinium macrocarpon HOM05D007622 ORTHO05D009409 2.9e-07 58.9 51 58.8


User provided reference genes

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