Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.6e-52 208.0 106 100.0
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.5e-21 105.5 94 61.7
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 4.7e-20 101.3 99 59.6
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 8.1e-20 100.5 94 61.7
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 1.8e-19 99.4 85 63.5
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.8e-19 99.4 85 63.5
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.8e-19 99.4 85 63.5
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 1.8e-19 99.4 81 65.4
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.7e-17 91.7 82 56.1
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 6.4e-17 90.9 81 59.3
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 1.4e-16 89.7 81 56.8
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.4e-16 89.7 85 56.5
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.4e-16 89.0 78 57.7
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 3.2e-16 88.6 93 51.6
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 4.1e-16 88.2 85 54.1
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 4.1e-16 88.2 85 54.1
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 9.2e-16 87.0 81 55.6
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 9.2e-16 87.0 81 55.6
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 9.2e-16 87.0 81 55.6
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 9.2e-16 87.0 82 56.1
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 9.2e-16 87.0 85 55.3
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 1.6e-15 86.3 81 55.6
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.6e-15 86.3 82 53.7
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 2.7e-15 85.5 82 54.9
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 2.7e-15 85.5 81 54.3
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 2.7e-15 85.5 81 54.3
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 2.7e-15 85.5 85 52.9
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 2.7e-15 85.5 81 54.3
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 3.5e-15 85.1 78 57.7
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 3.5e-15 85.1 95 48.4
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 4.6e-15 84.7 81 53.1
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 6.0e-15 84.3 78 56.4
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 7.8e-15 84.0 81 51.9
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 7.8e-15 84.0 85 52.9
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 7.8e-15 84.0 75 58.7
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 7.8e-15 84.0 83 53.0
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 7.8e-15 84.0 83 53.0
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 7.8e-15 84.0 81 55.6
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 7.8e-15 84.0 85 49.4
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 7.8e-15 84.0 81 54.3
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 1.3e-14 83.2 81 54.3
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.3e-14 83.2 81 54.3
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 1.3e-14 83.2 78 53.8
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 1.3e-14 83.2 81 54.3
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 1.3e-14 83.2 81 55.6
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.7e-14 82.8 81 53.1
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 1.7e-14 82.8 81 53.1
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 1.7e-14 82.8 85 52.9
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 1.7e-14 82.8 78 55.1
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.7e-14 82.8 81 51.9
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 1.7e-14 82.8 75 57.3
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 2.3e-14 82.4 81 51.9
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 3.0e-14 82.0 78 53.8
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 3.0e-14 82.0 81 51.9
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 3.0e-14 82.0 81 53.1
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 3.0e-14 82.0 78 56.4
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 3.9e-14 81.6 81 51.9
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 3.9e-14 81.6 81 55.6
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 3.9e-14 81.6 81 55.6
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 5.1e-14 81.3 78 55.1
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 5.1e-14 81.3 93 48.4
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 5.1e-14 81.3 81 51.9
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 5.1e-14 81.3 81 50.6
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 5.1e-14 81.3 81 53.1
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 5.1e-14 81.3 81 53.1
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 6.6e-14 80.9 95 48.4
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 6.6e-14 80.9 81 53.1
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 8.6e-14 80.5 81 49.4
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.6e-14 80.5 107 43.0
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 8.6e-14 80.5 81 53.1
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 1.1e-13 80.1 81 50.6
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 1.1e-13 80.1 81 54.3
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 1.5e-13 79.7 81 49.4
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 1.5e-13 79.7 81 51.9
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 1.9e-13 79.3 78 53.8
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 1.9e-13 79.3 81 49.4
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.9e-13 79.3 81 51.9
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 2.5e-13 79.0 79 53.2
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 3.3e-13 78.6 78 51.3
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 3.3e-13 78.6 78 52.6
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 3.3e-13 78.6 81 49.4
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 4.3e-13 78.2 81 51.9
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 4.3e-13 78.2 78 52.6
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 4.3e-13 78.2 78 52.6
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 4.3e-13 78.2 78 52.6
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 5.6e-13 77.8 81 51.9
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 5.6e-13 77.8 81 51.9
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 7.3e-13 77.4 78 52.6
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 9.5e-13 77.0 79 49.4
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 1.2e-12 76.6 81 50.6
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 1.6e-12 76.3 81 48.1
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 2.1e-12 75.9 81 50.6
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 2.1e-12 75.9 81 50.6
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 3.6e-12 75.1 78 51.3
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.1e-11 73.6 79 48.1
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.1e-11 73.6 78 52.6
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 7.6e-10 67.4 119 36.1
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 2.2e-09 65.9 82 45.1
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 4.9e-09 64.7 75 48.0
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 1.4e-08 63.2 76 47.4
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 9.2e-08 60.5 83 41.0
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 2.1e-07 59.3 74 43.2
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 2.7e-07 58.9 61 50.8
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 6.0e-07 57.8 83 38.6
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 6.0e-07 57.8 75 40.0
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 1.0e-06 57.0 76 44.7
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 1.7e-06 56.2 81 42.0
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.7e-06 56.2 41 58.5
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 1.7e-06 56.2 37 67.6
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 8.6e-06 53.9 83 36.1
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 8.6e-06 53.9 83 36.1


User provided reference genes

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