Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.6e-124 448.4 243 100.0
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-104 382.9 227 93.0
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-104 382.9 227 93.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 9.2e-104 380.6 227 94.3
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.5e-101 372.5 227 92.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-100 369.4 227 91.2
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.5e-80 302.8 231 78.4
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 8.8e-38 161.4 245 53.1
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 4.4e-37 159.1 214 54.2
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.7e-36 157.1 245 51.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.7e-36 156.0 223 56.5
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 5.3e-35 152.1 229 53.7
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.2e-34 151.0 224 53.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.6e-34 150.6 244 52.5
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.3e-33 147.5 239 51.9
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 6.5e-33 145.2 222 54.5
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.1e-32 144.4 242 50.0
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.5e-32 143.3 223 52.9
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 2.5e-32 143.3 223 52.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.2e-32 141.7 220 53.2
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.1e-31 140.2 219 52.1
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.7e-31 139.0 225 49.8
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 6.1e-31 138.7 221 49.8
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 6.1e-31 138.7 238 49.2
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 6.1e-31 138.7 241 49.0
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.0e-31 138.3 227 49.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.0e-30 136.0 213 51.6
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.0e-30 136.0 223 52.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 4.0e-30 136.0 235 46.4
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.8e-30 135.2 225 49.3
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 6.8e-30 135.2 236 49.2
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.0e-29 133.7 232 46.6
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.4e-29 132.9 227 51.5
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 9.8e-29 131.3 233 48.9
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 8.3e-28 128.3 216 46.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.4e-27 126.7 184 51.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 4.1e-27 125.9 216 47.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 9.1e-27 124.8 224 49.1
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.1e-27 124.8 218 46.8
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.6e-26 124.0 252 46.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 7.7e-26 121.7 218 43.1
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.0e-25 121.3 229 46.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.3e-25 120.9 252 45.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 8.6e-25 118.2 193 50.3
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-24 117.9 214 44.9
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.1e-24 117.9 209 47.4
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.5e-24 116.7 196 50.0
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 9.5e-24 114.8 198 51.0
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.2e-23 114.4 204 49.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.6e-23 114.0 222 48.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.6e-23 114.0 221 48.4
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.1e-23 113.6 217 47.9
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 2.1e-23 113.6 197 50.8
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 3.6e-23 112.8 201 47.3
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.7e-23 112.5 246 41.9
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 6.1e-23 112.1 218 46.3
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.0e-22 111.3 229 44.1
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.4e-22 110.9 238 42.4
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.8e-22 110.5 243 42.4
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.3e-22 110.2 202 44.1
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 2.3e-22 110.2 193 48.2
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 5.2e-22 109.0 231 42.4
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 5.2e-22 109.0 243 41.6
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.2e-21 107.8 239 43.9
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.5e-21 107.5 175 48.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.4e-21 105.9 202 43.6
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 5.7e-21 105.5 195 44.6
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 9.8e-21 104.8 193 46.1
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 6.3e-20 102.1 206 46.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.3e-20 101.7 181 49.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-19 101.3 181 48.6
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-19 101.3 207 42.0
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-19 100.9 181 48.1
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 3.2e-19 99.8 192 43.8
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 5.4e-19 99.0 213 41.8
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.6e-18 97.4 221 39.8
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 7.8e-18 95.1 215 39.5
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.7e-17 94.0 256 37.9
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.7e-17 94.0 216 39.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.7e-17 94.0 223 38.6
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.7e-17 94.0 219 38.8
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.3e-17 93.6 216 40.3
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 5.0e-17 92.4 214 40.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 8.6e-17 91.7 222 36.9
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 8.6e-17 91.7 222 36.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 8.6e-17 91.7 224 37.5
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.5e-16 90.9 222 36.9
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.5e-16 90.9 208 41.8
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-16 90.5 214 38.8
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.5e-16 90.1 216 38.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 2.5e-16 90.1 175 44.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.3e-16 89.7 204 42.6
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.3e-16 89.4 164 44.5
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.6e-16 89.0 204 41.7
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 7.3e-16 88.6 164 43.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 9.5e-16 88.2 207 41.1
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.2e-15 87.8 234 40.6
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.6e-15 87.4 237 34.6
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.1e-15 87.0 184 44.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.1e-15 87.0 266 36.1
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.8e-15 86.7 235 39.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.8e-15 86.7 193 43.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.6e-15 86.3 267 34.8
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.6e-15 86.3 239 39.3
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.7e-15 85.9 218 38.5
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 4.7e-15 85.9 220 40.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 6.1e-15 85.5 227 38.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.3e-14 83.6 176 40.9
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 3.1e-14 83.2 194 39.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 4.0e-14 82.8 182 41.2
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.2e-14 82.4 241 36.5
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.2e-14 82.4 224 36.6
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 5.2e-14 82.4 200 40.0
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 5.2e-14 82.4 189 41.8
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 6.8e-14 82.0 259 34.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 8.9e-14 81.6 203 40.9
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-13 80.9 204 40.7
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.4e-13 79.7 176 40.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 4.4e-13 79.3 222 33.8
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 5.8e-13 79.0 143 43.4
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.3e-12 77.8 199 37.7
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.7e-12 77.4 145 42.8
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.2e-12 77.0 173 41.0
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.9e-12 75.9 85 57.6
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 8.3e-12 75.1 207 38.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.4e-11 74.3 197 37.6
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 3.2e-11 73.2 154 37.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 5.4e-11 72.4 252 32.5
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 5.4e-11 72.4 151 39.7
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 7.0e-11 72.0 125 46.4
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 9.2e-11 71.6 219 37.9
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.2e-11 71.6 180 43.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 6.0e-10 68.9 200 37.5
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 6.0e-10 68.9 247 34.4
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 1.0e-09 68.2 153 37.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 3.0e-09 66.6 119 47.9
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 3.0e-09 66.6 331 29.9
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.1e-08 64.7 166 39.8
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.3e-08 63.2 290 29.3
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 9.5e-08 61.6 206 31.6
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.2e-07 61.2 138 42.8
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.8e-07 60.1 294 29.3
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.4e-06 57.8 167 33.5
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.1e-06 56.6 115 45.2


User provided reference genes

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