Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 4.5e-178 627.9 332 100.0
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 3.6e-151 538.5 370 81.4
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.1e-135 486.1 372 74.7
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.6e-133 479.2 255 99.6
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.4e-131 471.5 375 73.1
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 2.2e-116 422.9 374 68.2
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.0e-76 291.2 391 50.6
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 2.5e-59 233.4 287 52.6
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 2.5e-59 233.4 261 54.8
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 6.8e-57 225.3 308 51.0
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 8.9e-57 224.9 266 53.4
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 2.0e-56 223.8 271 53.1
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 2.6e-56 223.4 253 56.5
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 2.2e-55 220.3 250 55.6
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 4.9e-55 219.2 256 54.3
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.0e-53 212.2 250 54.8
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 1.3e-52 211.1 247 54.3
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 5.0e-52 209.1 254 51.6
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 1.9e-51 207.2 257 56.0
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 4.3e-51 206.1 256 57.4
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 7.3e-51 205.3 254 53.1
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 9.5e-51 204.9 256 53.9
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.6e-50 204.1 255 51.0
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 2.1e-50 203.8 263 51.3
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 2.8e-50 203.4 255 54.5
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 2.8e-50 203.4 250 52.0
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 6.8e-49 198.7 256 52.0
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 2.0e-48 197.2 256 51.2
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 9.8e-48 194.9 256 50.8
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 1.7e-47 194.1 255 50.2
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 2.9e-47 193.4 263 50.2
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 2.4e-46 190.3 316 43.4
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 4.1e-46 189.5 257 53.3
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 5.4e-46 189.1 259 49.0
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 5.4e-46 189.1 257 52.1
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 5.4e-46 189.1 257 52.1
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 2.7e-45 186.8 384 40.6
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 1.3e-44 184.5 212 54.7
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 6.6e-44 182.2 226 52.2
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 1.9e-43 180.6 255 49.8
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-42 177.9 257 48.2
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.6e-42 177.6 253 49.0
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 6.2e-42 175.6 266 46.2
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 1.8e-41 174.1 259 48.6
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 4.4e-40 169.5 255 45.5
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 7.5e-40 168.7 262 46.2
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 2.2e-39 167.2 251 43.0
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 4.9e-39 166.0 375 38.7
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 4.9e-39 166.0 316 40.2
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 8.3e-39 165.2 278 43.9
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 1.1e-38 164.9 258 46.1
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 1.1e-38 164.9 375 38.4
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.9e-38 164.1 375 39.5
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 2.4e-38 163.7 317 41.6
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 4.1e-38 162.9 264 47.0
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 5.4e-38 162.5 258 47.3
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 2.1e-37 160.6 238 45.8
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 3.0e-36 156.8 255 45.1
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 5.1e-36 156.0 256 43.8
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 8.6e-36 155.2 247 45.3
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 1.5e-35 154.5 257 45.5
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 1.5e-35 154.5 257 44.7
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 2.5e-35 153.7 228 46.9
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 9.5e-35 151.8 257 44.0
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 1.6e-34 151.0 320 40.6
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 2.8e-34 150.2 312 40.7
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.4e-33 147.9 258 45.0
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.4e-33 147.9 251 44.2
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 6.8e-33 145.6 268 39.9
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 3.4e-32 143.3 119 66.4
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 7.6e-32 142.1 319 37.9
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 9.9e-32 141.7 236 42.4
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 1.7e-31 141.0 254 41.3
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 4.2e-30 136.3 236 41.5
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 2.7e-29 133.7 289 39.4
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 1.7e-28 131.0 248 43.5
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 2.3e-28 130.6 283 39.6
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 5.1e-28 129.4 335 36.1
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 2.5e-27 127.1 284 38.7
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 1.2e-26 124.8 245 41.6
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 1.2e-26 124.8 248 41.9
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 2.8e-26 123.6 169 50.9
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 3.6e-26 123.2 248 41.9
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 4.7e-26 122.9 253 41.1
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 4.0e-25 119.8 251 39.0
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 2.6e-24 117.1 245 40.8
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 4.4e-24 116.3 151 52.3
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 9.9e-24 115.2 271 36.5
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 4.9e-23 112.8 241 40.7
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.9e-22 110.9 169 42.6
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 8.7e-20 102.1 81 70.4
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 6.9e-17 92.4 241 36.5
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 1.7e-15 87.8 251 35.1
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 4.8e-10 69.7 256 30.1
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 6.2e-10 69.3 159 39.0
THA.LOC104803861 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 4.0e-09 66.6 287 25.1
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 6.9e-09 65.9 59 61.0
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 2.6e-08 63.9 247 27.9
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 3.4e-08 63.5 248 29.0
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 5.8e-08 62.8 65 55.4
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 7.6e-08 62.4 248 27.8
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 9.9e-08 62.0 44 70.5
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 9.9e-08 62.0 44 70.5
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 9.9e-08 62.0 44 70.5
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 9.9e-08 62.0 44 70.5
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 9.9e-08 62.0 235 28.5
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 2.9e-07 60.5 245 28.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 2.9e-07 60.5 243 27.2
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 2.9e-07 60.5 255 26.3
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 3.8e-07 60.1 279 26.5
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.9e-07 59.7 292 27.1
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 1.4e-06 58.2 272 27.6
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 1.9e-06 57.8 253 27.3
Potri.018G019400 Populus trichocarpa HOM05D005497 ORTHO05D006733 1.9e-06 57.8 245 27.3
arahy.Tifrunner.gnm1.ann1.FJBE5X Arachis hypogaea HOM05D005497 ORTHO05D006733 3.2e-06 57.0 282 27.3
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 3.2e-06 57.0 240 27.9
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 3.2e-06 57.0 274 27.0
Glyma.04G061200 Glycine max HOM05D005497 ORTHO05D006733 3.2e-06 57.0 258 27.5
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 3.2e-06 57.0 135 38.5
arahy.Tifrunner.gnm1.ann1.F9G1S6 Arachis hypogaea HOM05D005497 ORTHO05D006733 5.5e-06 56.2 284 27.1
FAN05G5083 Fragaria x ananassa HOM05D005497 ORTHO05D006733 5.5e-06 56.2 241 27.4
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 5.5e-06 56.2 269 24.2
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 5.5e-06 56.2 240 27.1
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 7.1e-06 55.8 270 26.3
Aa31LG2G18440 Aethionema arabicum HOM05D005497 ORTHO05D006733 9.3e-06 55.5 230 27.4
BolC2t06432H Brassica oleracea HOM05D005497 ORTHO05D006733 9.3e-06 55.5 261 26.1


User provided reference genes

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