Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.9e-150 535.8 263 100.0
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 2.5e-139 498.8 263 93.5
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 9.6e-123 443.7 263 85.2
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 3.7e-114 415.2 268 77.6
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 4.5e-112 408.3 280 75.0
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 3.7e-106 388.7 209 93.8
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 4.1e-105 385.2 268 73.1
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 6.9e-105 384.4 267 74.2
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 6.9e-105 384.4 267 74.2
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 2.6e-104 382.5 261 75.5
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 3.4e-104 382.1 269 74.0
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 2.9e-103 379.0 274 71.9
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 5.0e-103 378.3 250 76.4
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 6.5e-103 377.9 263 73.0
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 8.5e-103 377.5 266 72.9
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 3.2e-102 375.6 260 73.5
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.2e-102 375.2 260 73.5
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 4.2e-102 375.2 272 71.0
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 7.2e-102 374.4 233 78.5
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 7.2e-102 374.4 263 72.6
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 3.6e-101 372.1 259 73.4
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 3.6e-101 372.1 265 72.1
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 6.1e-101 371.3 264 73.1
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 1.4e-100 370.2 259 72.2
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 1.4e-100 370.2 259 73.7
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 2.3e-100 369.4 259 71.4
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 3.9e-100 368.6 265 69.8
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 1.1e-99 367.1 260 70.8
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 3.3e-99 365.5 261 70.9
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 3.3e-99 365.5 266 71.4
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 3.3e-99 365.5 271 70.1
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 4.4e-99 365.2 263 71.9
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 4.4e-99 365.2 200 84.5
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 2.8e-98 362.5 258 70.9
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 8.2e-98 360.9 263 69.6
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 8.2e-98 360.9 242 73.6
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 4.1e-97 358.6 254 71.3
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 5.3e-97 358.2 266 69.5
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 5.3e-97 358.2 217 79.3
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 1.2e-96 357.1 270 68.1
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 1.2e-96 357.1 198 85.4
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 2.0e-96 356.3 264 68.2
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 2.6e-96 355.9 273 66.7
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 3.4e-96 355.5 203 82.3
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 1.3e-95 353.6 229 73.8
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 1.7e-95 353.2 210 79.5
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 1.7e-95 353.2 197 84.8
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 3.8e-95 352.1 259 67.6
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 5.0e-95 351.7 265 66.0
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 5.0e-95 351.7 216 77.3
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 8.5e-95 350.9 223 78.5
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 1.4e-94 350.1 251 69.3
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 1.4e-94 350.1 252 68.3
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 1.9e-94 349.7 261 67.4
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.5e-94 349.4 258 67.4
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 2.5e-94 349.4 252 69.4
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 3.2e-94 349.0 230 73.5
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 3.2e-94 349.0 230 73.5
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 3.2e-94 349.0 200 82.0
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 5.5e-94 348.2 252 68.3
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 5.5e-94 348.2 259 68.7
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 5.5e-94 348.2 253 68.8
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 1.6e-93 346.7 255 69.4
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 1.6e-93 346.7 220 75.9
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 2.7e-93 345.9 223 76.2
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 6.1e-93 344.7 251 68.5
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 6.1e-93 344.7 265 66.4
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 6.1e-93 344.7 265 66.4
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 7.9e-93 344.4 253 68.8
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 1.0e-92 344.0 210 77.6
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 1.8e-92 343.2 253 70.4
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 3.9e-92 342.0 265 66.0
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 1.3e-90 337.0 230 72.6
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 2.2e-90 336.3 223 74.0
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 2.8e-90 335.9 198 79.3
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 4.1e-89 332.0 275 64.0
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 7.0e-89 331.3 288 63.2
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 1.2e-88 330.5 197 76.1
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 2.0e-88 329.7 195 79.5
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 7.7e-88 327.8 215 74.0
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 2.9e-87 325.9 189 78.8
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 1.1e-86 323.9 227 69.2
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 2.7e-85 319.3 191 77.0
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 1.0e-84 317.4 273 65.2
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 4.4e-83 312.0 164 95.1
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.3e-82 310.5 254 63.8
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 1.4e-81 307.0 197 72.6
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 2.7e-80 302.8 273 60.1
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 3.5e-80 302.4 270 61.9
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 5.9e-80 301.6 162 84.0
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 1.5e-78 297.0 202 70.8
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 5.5e-78 295.0 165 80.0
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 2.1e-77 293.1 360 49.4
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 8.0e-77 291.2 187 74.3
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 8.3e-74 281.2 293 54.3
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 7.0e-73 278.1 162 75.9
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-72 276.2 187 69.0
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 2.1e-69 266.5 216 64.4
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.8e-57 226.9 197 63.5
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 1.6e-56 223.8 121 81.8
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 1.0e-55 221.1 190 66.3
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 1.6e-53 213.8 249 53.4
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.4e-51 205.7 121 75.2
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 2.2e-50 203.4 217 55.3
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 4.1e-49 199.1 488 33.8
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 2.3e-47 193.4 266 46.6
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 3.9e-47 192.6 174 64.4
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 3.5e-40 169.5 110 76.4
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 5.1e-39 165.6 94 75.5
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.4e-33 147.5 73 84.9
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 4.6e-32 142.5 216 43.5
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.8e-27 125.6 83 73.5
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 2.2e-26 123.6 68 79.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 9.6e-14 81.6 96 49.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-09 66.2 61 60.7


User provided reference genes

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