Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2215.3 1116 100.0
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 2159.8 1116 97.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2150.9 1116 96.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2150.6 1116 96.9
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 2144.0 1125 95.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1967.2 1114 88.0
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1717.2 1113 77.4
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1681.4 1111 75.9
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1643.2 1111 74.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1514.2 1122 68.5
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1493.4 1128 67.1
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1479.2 1119 67.0
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1478.0 1117 67.2
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1476.8 1117 65.8
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1459.9 1128 66.4
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1450.6 1117 66.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1434.5 1117 64.3
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1423.3 1115 65.4
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1421.4 1116 64.6
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1420.6 1117 64.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1416.0 1117 63.7
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1411.4 1117 63.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1410.6 1127 63.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1130 64.2
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1406.7 1116 63.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1404.8 1116 63.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 1115 62.9
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1398.3 1125 65.2
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1392.9 1110 63.7
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 1184 60.1
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1384.4 1183 61.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1373.2 1118 64.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1371.3 1118 64.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1359.4 1115 63.2
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1359.0 1069 66.8
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1347.0 1118 62.2
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1147 60.9
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1337.0 1158 60.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1336.2 1122 60.1
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 1122 60.0
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1329.3 1173 60.4
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1327.8 1115 61.2
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1325.8 1129 59.9
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1324.3 1118 60.9
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1322.8 1119 61.1
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1320.1 1117 60.4
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1317.4 1117 60.6
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1317.0 1138 59.6
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1113 59.7
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1116 59.1
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1308.9 1116 60.5
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1116 59.2
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1113 59.7
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1302.3 1122 60.5
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1296.6 1105 61.2
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1295.0 1105 61.1
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1120 59.5
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1287.7 1105 60.9
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1138 60.7
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 1121 59.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 956 68.1
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1272.7 1117 60.1
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1115 58.7
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1111 59.0
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1116 58.8
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1113 60.0
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 1125 58.5
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 1122 58.4
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1263.4 1120 58.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1263.4 1111 57.8
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1116 58.3
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1114 57.6
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1124 58.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1124 58.5
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1254.2 1116 58.7
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1254.2 1114 59.1
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 1017 62.9
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 1171 55.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1245.7 1116 57.8
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1244.6 1117 57.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1243.4 1113 58.1
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1116 57.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1118 57.8
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1239.2 1109 57.5
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1238.4 933 67.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 1202 54.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1234.9 956 65.0
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1233.0 1115 57.7
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 1133 56.4
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1228.4 1117 57.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1217.2 1124 56.4
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1216.1 1006 64.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1213.7 1138 56.3
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 1116 56.4
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1194.9 1097 56.4
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1188.3 959 63.0
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1178.3 1189 53.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1155.6 1157 54.5
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1153.7 1008 59.3
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1146.0 957 63.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1145.6 1117 53.5
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1145.6 839 67.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1110.5 793 70.1
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1101.3 1123 52.7
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.3e-305 1051.6 1092 52.9
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.3e-303 1045.8 899 58.4
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 3.8e-293 1011.9 1158 47.8
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.9e-289 999.6 732 66.7
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 4.0e-279 965.3 798 61.0
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.9e-269 931.8 1031 50.5
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 4.5e-262 908.7 646 68.9
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.7e-258 894.8 1128 44.1
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.3e-250 869.8 1018 47.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.5e-249 867.1 1151 42.9
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.7e-232 809.3 1104 42.5
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.5e-230 802.7 820 52.0
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-191 674.9 977 40.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.7e-165 585.9 1109 36.2
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.5e-158 563.5 411 68.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.5e-153 548.1 463 60.5
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 3.8e-144 516.9 1130 33.8
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.5e-143 514.2 537 53.1
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.2e-117 426.8 331 61.6
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 6.6e-104 383.3 1245 27.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.4e-100 370.9 325 57.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-80 304.7 234 65.8
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-77 295.8 520 36.7
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 9.5e-71 273.1 377 43.2
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-64 251.5 247 54.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.1e-64 250.8 234 55.6
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.1e-62 245.4 230 53.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.8e-57 226.9 377 38.7
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-56 226.1 234 52.1
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.7e-56 223.4 248 50.0
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 9.3e-50 203.4 211 52.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.0e-43 183.3 399 34.6
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.2e-42 177.9 258 42.6
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.0e-40 171.8 175 50.9
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-40 171.4 175 50.9
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-40 171.4 175 50.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.9e-40 171.4 175 50.9
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-39 169.5 175 50.3
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 4.3e-31 141.4 144 51.4
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-30 139.8 175 45.1
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 9.0e-29 133.7 248 39.1
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.0e-29 133.7 248 39.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.2e-28 133.3 390 29.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.0e-27 130.2 248 38.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.3e-23 114.8 241 34.4
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.5e-20 106.3 130 46.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.4e-20 105.1 81 60.5
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.3e-19 103.2 299 27.4
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.5e-18 97.8 103 51.5
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 3.6e-17 95.1 56 75.0
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.7e-17 94.7 77 59.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 4.1e-13 81.6 55 69.1
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.4e-10 70.5 70 51.4


User provided reference genes

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