Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.6e-62 242.7 129 100.0
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 9.7e-60 233.4 129 96.9
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 9.7e-60 233.4 129 96.9
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.4e-58 228.8 130 96.9
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.5e-49 198.4 125 83.2
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 9.2e-26 120.6 144 55.6
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.6e-22 109.8 163 49.1
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 1.6e-22 109.8 136 53.7
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.4e-21 106.7 163 47.9
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.2e-20 103.6 153 51.0
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.2e-20 103.6 153 51.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.4e-20 101.7 135 50.4
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 5.7e-20 101.3 161 47.8
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.4e-18 96.7 149 48.3
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.4e-18 94.7 151 45.7
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 5.4e-18 94.7 161 44.1
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.2e-17 93.6 151 45.7
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.0e-17 92.8 151 45.7
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 2.7e-17 92.4 114 50.9
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 4.6e-17 91.7 147 45.6
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 5.9e-17 91.3 139 46.8
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 7.8e-17 90.9 139 45.3
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 6.6e-16 87.8 170 40.0
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 4.3e-15 85.1 149 43.0
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 7.3e-15 84.3 135 47.4
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 2.8e-14 82.4 114 46.5
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 4.7e-14 81.6 161 39.1
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.8e-13 79.7 113 45.1
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.3e-13 79.3 134 48.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 2.3e-13 79.3 105 53.3
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.0e-13 78.6 133 44.4
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.0e-13 78.6 102 47.1
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 4.0e-13 78.6 142 38.0
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 5.2e-13 78.2 117 45.3
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 5.2e-13 78.2 102 46.1
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 8.9e-13 77.4 133 44.4
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.2e-12 77.0 100 48.0
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.5e-12 76.6 114 46.5
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.5e-12 76.6 133 44.4
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.5e-12 76.6 146 41.1
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.6e-12 75.9 145 40.7
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 3.4e-12 75.5 108 46.3
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 7.5e-12 74.3 129 41.1
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 9.8e-12 73.9 115 44.3
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 9.8e-12 73.9 108 48.1
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 9.8e-12 73.9 161 36.0
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.3e-11 73.6 114 43.9
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.3e-11 73.6 110 46.4
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.7e-11 73.2 118 44.1
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 3.7e-11 72.0 162 37.0
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.9e-11 71.6 112 42.9
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.1e-10 70.5 144 36.8
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 1.4e-10 70.1 161 37.9
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.9e-10 69.7 131 44.3
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.9e-10 69.7 129 42.6
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-10 69.3 119 39.5
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-10 69.3 119 39.5
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 2.4e-10 69.3 107 40.2
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 7.0e-10 67.8 131 39.7
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 7.0e-10 67.8 93 46.2
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 9.2e-10 67.4 101 43.6
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.6e-09 66.6 107 42.1
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.6e-09 66.6 147 36.1
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 2.0e-09 66.2 107 39.3
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 2.7e-09 65.9 107 39.3
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 6.0e-09 64.7 114 43.0
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 6.0e-09 64.7 72 48.6
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 7.8e-09 64.3 164 32.9
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 7.8e-09 64.3 115 40.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.0e-08 63.9 114 42.1
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.0e-08 63.9 104 42.3
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 1.3e-08 63.5 121 46.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.7e-08 63.2 78 43.6
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 1.7e-08 63.2 157 33.8
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 6.6e-08 61.2 39 71.8
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 6.6e-08 61.2 53 50.9
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 8.6e-08 60.8 94 39.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.1e-07 60.5 77 42.9
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-07 59.3 115 37.4
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.3e-07 58.9 69 44.9
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 4.3e-07 58.5 115 40.0
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.6e-07 58.2 115 37.4
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.6e-07 58.2 115 37.4
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 5.6e-07 58.2 121 39.7
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.2e-06 57.0 81 35.8
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.2e-06 57.0 68 45.6
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.6e-06 56.6 43 51.2
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.1e-06 56.2 115 34.8
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-06 56.2 112 39.3
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.1e-06 56.2 112 39.3
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.1e-06 56.2 40 60.0
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 2.8e-06 55.8 68 42.6
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.8e-06 55.8 86 41.9
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 2.8e-06 55.8 65 46.2
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.6e-06 55.5 53 49.1
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.7e-06 55.1 119 37.0
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 4.7e-06 55.1 72 41.7
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 4.7e-06 55.1 113 37.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 6.2e-06 54.7 114 37.7
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 6.2e-06 54.7 43 55.8
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 6.2e-06 54.7 38 63.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 8.1e-06 54.3 112 34.8


User provided reference genes

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