Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.4e-130 468.0 245 100.0
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.3e-121 439.9 242 95.0
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 3.2e-120 435.3 242 94.6
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.7e-119 432.2 234 96.6
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.3e-118 429.1 240 93.8
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.8e-116 421.4 236 94.1
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 1.2e-82 310.5 250 71.2
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 6.7e-70 268.1 245 58.8
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 2.7e-63 246.1 238 59.7
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 6.8e-62 241.5 244 52.5
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 4.9e-52 208.8 241 49.4
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 2.4e-51 206.5 242 48.8
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 8.6e-49 198.0 245 47.8
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 4.7e-47 192.2 245 46.1
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 6.4e-44 181.8 231 46.3
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 8.3e-44 181.4 245 45.3
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 5.4e-43 178.7 235 46.0
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 1.7e-41 173.7 247 44.1
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 5.0e-41 172.2 250 45.2
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 1.6e-39 167.2 248 41.9
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 6.2e-39 165.2 233 42.5
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 6.2e-39 165.2 231 43.3
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 8.0e-39 164.9 231 43.3
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.1e-38 162.9 270 40.7
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 1.5e-37 160.6 239 41.8
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.7e-36 156.0 259 40.2
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 7.0e-35 151.8 248 39.9
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 5.0e-33 145.6 245 39.2
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 8.6e-33 144.8 243 39.5
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 1.5e-32 144.1 265 37.0
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 5.6e-32 142.1 240 35.8
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 9.5e-32 141.4 238 37.4
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.2e-31 141.0 277 34.7
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 1.2e-31 141.0 254 38.6
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.8e-31 139.8 252 37.3
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 4.7e-31 139.0 252 33.7
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 1.4e-30 137.5 234 36.3
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 2.3e-30 136.7 234 36.3
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 4.0e-30 136.0 237 34.2
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 4.0e-30 136.0 242 36.0
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 1.2e-29 134.4 239 39.7
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 1.2e-29 134.4 235 37.9
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 2.0e-29 133.7 274 34.3
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 4.4e-29 132.5 238 35.7
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 5.8e-29 132.1 233 37.8
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 9.9e-29 131.3 267 34.5
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 9.9e-29 131.3 238 35.7
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.3e-28 131.0 247 36.0
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 1.7e-28 130.6 249 34.9
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 2.2e-28 130.2 249 35.3
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 2.2e-28 130.2 274 32.8
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 2.9e-28 129.8 249 35.7
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 1.1e-27 127.9 235 36.2
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.1e-27 127.9 258 33.7
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.4e-27 127.5 250 33.2
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 1.4e-27 127.5 231 33.8
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.2e-26 124.4 243 35.4
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 3.5e-26 122.9 256 33.2
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 7.8e-26 121.7 234 32.9
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 1.3e-25 120.9 236 35.2
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.5e-24 117.5 228 34.6
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 2.1e-23 113.6 241 32.8
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 3.6e-23 112.8 251 34.7
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 6.2e-23 112.1 252 32.1
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 6.2e-23 112.1 250 32.0
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 8.1e-23 111.7 249 29.7
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 1.1e-22 111.3 222 34.2
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 1.4e-22 110.9 239 31.8
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 4.0e-22 109.4 250 31.6
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 8.9e-22 108.2 253 31.6
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 1.2e-21 107.8 237 35.9
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.5e-21 107.5 266 30.8
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 2.0e-21 107.1 266 30.8
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 2.6e-21 106.7 157 41.4
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 4.4e-21 105.9 236 32.2
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 3.8e-20 102.8 98 53.1
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 8.4e-20 101.7 182 38.5
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 1.1e-19 101.3 242 31.8
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 1.1e-19 101.3 260 30.0
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 1.4e-19 100.9 228 30.7
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 5.4e-19 99.0 228 29.8
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 1.6e-18 97.4 265 31.7
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 1.3e-17 94.4 251 31.1
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 1.1e-16 91.3 251 27.9
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 2.5e-16 90.1 242 31.0
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.5e-16 90.1 263 33.1
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 3.3e-16 89.7 120 41.7
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 9.6e-16 88.2 259 29.3
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 9.6e-16 88.2 258 28.7
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 1.2e-15 87.8 246 26.8
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 4.7e-15 85.9 259 29.0
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.8e-14 84.0 104 49.0
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.5e-13 80.9 230 28.7
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 7.6e-13 78.6 249 31.3
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 9.9e-13 78.2 102 41.2
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 6.4e-12 75.5 233 24.9
SEGI_34425 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 1.1e-11 74.7 102 41.2
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 4.2e-11 72.8 81 48.1
Mapoly0048s0108 Marchantia polymorpha HOM05D017347 ORTHO05D008131 9.3e-11 71.6 102 39.2
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 3.5e-10 69.7 198 29.8
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 1.7e-09 67.4 134 31.3
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 2.3e-09 67.0 98 37.8
CBR_g27764 Chara braunii HOM05D017347 ORTHO05D008131 2.5e-08 63.5 102 37.3
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 9.6e-08 61.6 47 61.7


User provided reference genes

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