Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.3e-118 429.9 237 100.0
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 9.4e-93 344.0 228 86.8
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.1e-80 302.0 228 77.2
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 3.6e-76 288.9 236 72.5
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 1.0e-62 244.2 221 67.9
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 3.4e-58 229.2 221 57.9
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.1e-56 222.2 236 53.8
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 1.2e-55 220.7 225 58.2
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 5.5e-53 211.8 219 56.6
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.9e-49 198.7 221 52.9
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 1.6e-47 193.7 230 53.9
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 2.3e-46 189.9 230 53.5
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 3.3e-45 186.0 232 50.4
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 4.3e-45 185.7 224 51.3
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 7.3e-45 184.9 223 50.2
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 4.0e-43 179.1 227 48.5
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.5e-42 177.2 223 48.9
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 4.4e-42 175.6 232 46.6
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 5.8e-42 175.3 224 49.1
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 7.5e-42 174.9 224 46.0
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 9.8e-42 174.5 262 43.5
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.3e-41 174.1 204 50.5
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.0e-38 164.5 227 47.6
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.7e-38 163.7 224 43.8
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.3e-38 163.3 182 61.5
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 3.9e-38 162.5 224 44.2
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 5.0e-38 162.2 223 46.2
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 2.5e-37 159.8 225 45.3
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.2e-36 157.5 223 46.6
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 4.0e-35 152.5 246 43.9
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 4.0e-35 152.5 229 45.0
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 7.5e-34 148.3 223 43.9
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.7e-33 147.1 239 42.3
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 6.4e-33 145.2 223 43.5
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 1.4e-32 144.1 225 44.4
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 1.4e-32 144.1 227 41.4
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 1.9e-32 143.7 187 47.1
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.1e-32 142.5 227 43.6
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 5.4e-32 142.1 123 61.0
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 9.2e-32 141.4 220 40.0
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 3.0e-30 136.3 223 40.8
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.5e-29 134.0 236 39.8
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 9.5e-29 131.3 156 51.9
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 6.2e-28 128.6 235 42.1
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.1e-27 127.9 221 38.9
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 1.8e-27 127.1 225 40.0
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.8e-27 127.1 221 41.2
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.0e-27 125.9 223 39.9
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 4.0e-27 125.9 226 38.9
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 5.2e-27 125.6 219 40.2
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 2.6e-26 123.2 239 38.5
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 4.4e-26 122.5 225 38.7
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 4.4e-26 122.5 225 38.7
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 9.9e-26 121.3 151 48.3
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 3.7e-25 119.4 230 38.7
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 4.9e-25 119.0 225 40.9
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.9e-24 117.1 213 42.7
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 4.1e-24 115.9 97 60.8
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 7.1e-24 115.2 208 41.8
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 1.6e-23 114.0 128 50.8
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.6e-23 114.0 192 42.2
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 7.8e-23 111.7 229 37.6
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 1.0e-22 111.3 117 54.7
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.0e-22 111.3 224 37.9
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 1.3e-22 110.9 224 37.1
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 1.3e-22 110.9 229 37.1
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.3e-22 110.9 191 41.9
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 2.3e-22 110.2 112 55.4
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.1e-21 107.8 221 36.2
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 7.3e-21 105.1 223 36.8
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 3.6e-20 102.8 262 32.8
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 2.6e-18 96.7 205 35.6
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 4.4e-18 95.9 223 34.1
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 4.4e-18 95.9 241 30.7
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 5.8e-18 95.5 163 40.5
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.3e-17 94.4 191 36.6
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 3.8e-17 92.8 221 34.4
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 4.9e-17 92.4 86 55.8
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 1.1e-16 91.3 241 32.4
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.1e-16 91.3 228 36.0
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.9e-16 90.5 225 35.6
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 1.2e-15 87.8 124 44.4
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 1.6e-15 87.4 92 47.8
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 2.7e-15 86.7 205 35.6
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 4.6e-15 85.9 227 33.5
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.3e-14 84.3 224 31.7
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 1.1e-13 81.3 226 30.5
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.9e-13 80.5 207 30.9
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 1.9e-13 80.5 102 50.0
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 1.6e-12 77.4 78 55.1
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.1e-12 77.0 214 33.6
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 2.8e-12 76.6 217 32.3
MD17G1043300 Malus domestica HOM05D007214 ORTHO05D008907 8.1e-12 75.1 53 75.5
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 3.1e-11 73.2 108 38.0
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 6.9e-11 72.0 224 30.8
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 9.0e-11 71.6 226 29.6
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 2.6e-10 70.1 219 28.3
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 6.4e-09 65.5 146 34.9
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 5.4e-08 62.4 91 41.8
Rhsim12G0075800 Rhododendron simsii HOM05D000660 ORTHO05D008907 9.3e-08 61.6 91 45.1
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 1.6e-07 60.8 226 28.3
Hund13295 Selenicereus undatus HOM05D007214 ORTHO05D008907 1.6e-07 60.8 146 32.2
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 6.0e-07 58.9 81 45.7
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 6.0e-07 58.9 166 31.9
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 7.9e-07 58.5 210 30.5
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 5.1e-06 55.8 46 58.7
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 8.7e-06 55.1 52 59.6


User provided reference genes

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