Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3807 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-71 273.1 136 100.0
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.2e-62 242.3 122 98.4
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 8.4e-62 240.4 122 97.5
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 8.4e-62 240.4 122 97.5
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 8.4e-62 240.4 122 97.5
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 3.6e-57 224.9 122 91.0
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 2.8e-49 198.7 122 80.3
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 4.5e-47 191.4 122 77.9
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 1.3e-41 173.3 133 68.4
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 4.8e-41 171.4 125 70.4
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 4.0e-40 168.3 127 66.1
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 2.0e-39 166.0 126 64.3
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 3.4e-39 165.2 130 66.2
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 7.6e-39 164.1 122 64.8
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 1.3e-38 163.3 125 68.8
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 8.4e-38 160.6 124 71.0
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 4.2e-37 158.3 126 66.7
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 9.3e-37 157.1 143 62.2
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 1.2e-36 156.8 144 63.9
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 1.2e-36 156.8 124 65.3
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 2.7e-36 155.6 144 63.2
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 4.6e-36 154.8 136 63.2
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 4.6e-36 154.8 122 61.5
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 4.6e-36 154.8 128 64.8
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 7.9e-36 154.1 127 66.1
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 1.0e-35 153.7 124 66.9
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 1.0e-35 153.7 124 64.5
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.3e-35 153.3 128 64.1
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 8.7e-35 150.6 123 63.4
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.1e-34 150.2 124 66.1
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.9e-34 149.4 134 65.7
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 4.3e-34 148.3 124 66.9
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 4.3e-34 148.3 125 64.0
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 4.3e-34 148.3 135 62.2
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 5.6e-34 147.9 147 59.2
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 9.6e-34 147.1 127 66.1
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 6.2e-33 144.4 123 62.6
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 8.2e-33 144.1 134 59.0
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 1.1e-32 143.7 140 57.9
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 1.4e-32 143.3 130 62.3
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 2.4e-32 142.5 97 73.2
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 3.1e-32 142.1 125 63.2
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 3.1e-32 142.1 133 60.9
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 6.9e-32 141.0 131 58.8
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 9.0e-32 140.6 128 63.3
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 9.0e-32 140.6 134 60.4
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 1.5e-31 139.8 129 60.5
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 2.0e-31 139.4 131 61.8
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 2.6e-31 139.0 132 56.8
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 1.3e-30 136.7 129 58.1
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 2.9e-30 135.6 132 57.6
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 2.9e-30 135.6 112 63.4
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 2.9e-30 135.6 138 58.0
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 2.9e-30 135.6 131 57.3
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 4.9e-30 134.8 129 56.6
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 8.4e-30 134.0 129 55.8
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 1.4e-29 133.3 100 65.0
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.9e-29 132.9 129 55.8
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 2.5e-29 132.5 129 58.1
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 2.5e-29 132.5 132 56.1
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 3.2e-29 132.1 123 56.9
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 4.2e-29 131.7 133 57.1
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 4.2e-29 131.7 128 58.6
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 5.5e-29 131.3 133 57.9
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 5.5e-29 131.3 114 62.3
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 7.1e-29 131.0 130 58.5
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 9.3e-29 130.6 128 56.2
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 1.2e-28 130.2 123 56.9
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 1.6e-28 129.8 136 52.9
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 1.6e-28 129.8 129 55.8
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 1.3e-27 126.7 130 53.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.3e-27 126.7 136 57.4
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.3e-27 126.7 128 56.2
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 2.3e-27 125.9 125 57.6
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 3.9e-27 125.2 126 56.3
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 6.7e-27 124.4 132 55.3
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 1.1e-26 123.6 105 63.8
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.1e-26 123.6 105 63.8
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 1.9e-26 122.9 129 55.0
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.3e-25 120.2 67 82.1
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 2.2e-25 119.4 114 58.8
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 2.8e-25 119.0 92 63.0
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 1.1e-24 117.1 128 53.9
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 3.1e-24 115.5 115 56.5
TPR.G21510 Trifolium pratense HOM05D004224 ORTHO05D006437 6.9e-24 114.4 113 54.9
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 1.3e-22 110.2 124 50.8
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 9.4e-21 104.0 109 55.0
BolC7t41056H Brassica oleracea HOM05D004224 ORTHO05D006437 1.4e-19 100.1 110 49.1
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 7.4e-18 94.4 116 48.3
TAR517G0001 Trochodendron aralioides HOM05D004224 ORTHO05D016135 1.3e-17 93.6 97 51.5
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.3e-14 83.6 118 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 5.0e-14 81.6 86 43.0
SMO358G0584 Selaginella moellendorffii HOM05D004224 ORTHO05D006437 6.1e-12 74.7 72 47.2
MD09G1129500 Malus domestica HOM05D004224 ORTHO05D006437 2.3e-11 72.8 40 90.0
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.7e-10 68.2 40 70.0
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 5.7e-10 68.2 40 70.0
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 7.4e-10 67.8 38 86.8
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 1.3e-09 67.0 40 67.5
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 1.3e-09 67.0 40 70.0
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 1.3e-09 67.0 40 67.5
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 1.3e-09 67.0 38 86.8
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 1.7e-09 66.6 38 86.8
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 4.8e-09 65.1 43 60.5
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 4.8e-09 65.1 40 62.5
BcaB02g11236 Brassica carinata HOM05D004224 ORTHO05D006437 1.8e-08 63.2 53 64.2
BcaC01g00842 Brassica carinata HOM05D018769 ORTHO05D032469 5.9e-07 58.2 30 76.7
BcaB02g11239 Brassica carinata HOM05D004224 ORTHO05D006437 1.7e-06 56.6 58 58.6
BolC6t36307H Brassica oleracea HOM05D000313 ORTHO05D021935 6.5e-06 54.7 63 46.0


User provided reference genes

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