Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3789 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.2e-44 183.0 103 100.0
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 1.0e-43 179.9 102 98.0
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.0e-43 179.9 102 98.0
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.0e-43 179.9 102 98.0
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.0e-43 179.9 102 98.0
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 5.4e-37 157.5 105 88.6
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 2.3e-19 99.0 112 59.8
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 3.6e-17 91.7 116 50.0
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 6.2e-17 90.9 116 56.0
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 1.1e-16 90.1 114 52.6
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 9.0e-16 87.0 117 51.3
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 5.8e-15 84.3 110 50.0
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.9e-15 83.6 114 45.6
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.9e-15 83.6 114 45.6
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.9e-15 83.6 114 45.6
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.9e-14 82.0 109 46.8
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.4e-13 77.8 115 47.8
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.7e-12 75.5 129 45.7
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.6e-12 74.7 115 45.2
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 4.6e-12 74.7 115 45.2
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.0e-11 73.6 105 49.5
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 1.7e-11 72.8 116 44.0
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 3.9e-11 71.6 109 43.1
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 6.6e-11 70.9 96 49.0
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 6.6e-11 70.9 116 48.3
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 8.7e-11 70.5 116 44.8
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.1e-10 70.1 110 42.7
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.5e-10 69.7 118 44.9
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.5e-10 69.7 119 46.2
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 2.8e-09 65.5 106 43.4
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.6e-09 65.1 117 43.6
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.8e-09 64.7 105 42.9
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 4.8e-09 64.7 127 42.5
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 8.1e-09 63.9 74 51.4
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 8.1e-09 63.9 115 43.5
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 1.1e-08 63.5 70 50.0
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.8e-08 62.8 116 42.2
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 1.8e-08 62.8 113 40.7
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 3.1e-08 62.0 78 48.7
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.0e-08 61.6 113 46.0
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 9.0e-08 60.5 75 49.3
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 1.2e-07 60.1 111 38.7
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 1.5e-07 59.7 109 43.1
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 1.5e-07 59.7 115 39.1
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 1.5e-07 59.7 111 40.5
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 2.6e-07 58.9 126 42.9
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.4e-07 58.5 70 52.9
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 3.4e-07 58.5 125 40.0
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 3.4e-07 58.5 104 42.3
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 3.4e-07 58.5 75 52.0
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 4.5e-07 58.2 73 47.9
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 4.5e-07 58.2 112 43.8
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 4.5e-07 58.2 110 42.7
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 4.5e-07 58.2 115 41.7
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 5.8e-07 57.8 111 38.7
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 5.8e-07 57.8 75 48.0
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 5.8e-07 57.8 70 51.4
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 5.8e-07 57.8 114 39.5
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 5.8e-07 57.8 71 50.7
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 7.6e-07 57.4 75 50.7
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 7.6e-07 57.4 123 39.0
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 7.6e-07 57.4 72 47.2
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 7.6e-07 57.4 118 39.8
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 9.9e-07 57.0 115 44.3
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 9.9e-07 57.0 125 40.8
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 9.9e-07 57.0 70 51.4
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.3e-06 56.6 113 40.7
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.3e-06 56.6 70 51.4
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 1.3e-06 56.6 104 41.3
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 1.7e-06 56.2 104 44.2
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.7e-06 56.2 74 47.3
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.7e-06 56.2 77 49.4
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.7e-06 56.2 75 48.0
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 2.2e-06 55.8 75 45.3
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 2.2e-06 55.8 115 38.3
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 2.2e-06 55.8 77 44.2
CANSAT78G2290 Cannabis sativa HOM05D002758 ORTHO05D002885 2.9e-06 55.5 102 44.1
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.8e-06 55.1 98 42.9
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 4.9e-06 54.7 119 39.5
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 4.9e-06 54.7 114 40.4
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 6.4e-06 54.3 115 43.5
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 8.4e-06 53.9 119 41.2
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 8.4e-06 53.9 96 43.8
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 8.4e-06 53.9 108 42.6
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 8.4e-06 53.9 116 37.9
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 8.4e-06 53.9 120 35.8


User provided reference genes

Program Settings