Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.7e-42 174.1 87 100.0
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.0e-40 168.7 87 96.6
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.6e-40 168.3 87 96.6
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.5e-40 166.8 87 95.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 9.8e-40 166.4 87 95.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.1e-38 162.9 87 92.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.2e-21 106.3 72 68.1
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.7e-20 102.4 74 66.2
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.6e-19 97.4 72 56.9
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.6e-19 97.4 73 67.1
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 6.2e-18 94.0 72 54.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.1e-17 93.2 83 53.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.8e-17 92.4 72 52.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 2.4e-17 92.0 81 50.6
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.4e-17 92.0 72 54.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 3.1e-17 91.7 74 51.4
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 4.0e-17 91.3 75 50.7
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 4.0e-17 91.3 72 54.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 6.8e-17 90.5 81 51.9
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 8.9e-17 90.1 73 56.2
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.2e-16 89.7 80 48.8
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 3.4e-16 88.2 82 53.7
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 3.4e-16 88.2 71 54.9
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 3.4e-16 88.2 69 53.6
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 7.6e-16 87.0 81 50.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.7e-15 85.9 72 51.4
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.9e-15 85.1 74 56.8
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.8e-15 84.7 81 49.4
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.4e-15 84.0 80 50.0
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 6.4e-15 84.0 80 50.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.9e-14 82.4 73 49.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.9e-14 82.4 73 49.3
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.4e-14 82.0 73 49.3
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.2e-14 81.3 57 56.1
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 4.2e-14 81.3 57 56.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.2e-14 81.3 72 59.7
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.2e-14 81.3 72 59.7
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 7.1e-14 80.5 80 46.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.2e-13 79.7 79 48.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-13 79.3 70 57.1
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.1e-13 79.0 79 45.6
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.1e-13 79.0 72 52.8
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.5e-13 78.2 78 51.3
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 4.6e-13 77.8 74 50.0
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.0e-13 77.4 67 46.3
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.0e-13 77.4 67 46.3
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.0e-13 77.4 56 55.4
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.8e-13 77.0 71 53.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.8e-13 77.0 72 48.6
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.8e-13 77.0 72 50.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.0e-12 76.6 73 52.1
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.0e-12 76.6 70 50.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.0e-12 76.6 70 50.0
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.0e-12 76.6 72 51.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.3e-12 76.3 70 47.1
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-12 75.9 83 48.2
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-12 75.9 76 48.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-12 75.9 76 47.4
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.3e-12 75.5 66 50.0
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 3.0e-12 75.1 75 52.0
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.0e-12 75.1 71 46.5
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 3.0e-12 75.1 70 57.1
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.9e-12 74.7 74 47.3
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.1e-12 74.3 83 48.2
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.1e-12 74.3 51 60.8
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 5.1e-12 74.3 66 48.5
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.6e-12 73.9 84 47.6
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 8.7e-12 73.6 82 46.3
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.1e-11 73.2 80 51.2
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.9e-11 72.4 79 45.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.5e-11 72.0 83 50.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.3e-11 71.6 80 46.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.3e-11 71.6 78 42.3
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 5.6e-11 70.9 74 52.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 9.6e-11 70.1 75 44.0
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.6e-11 70.1 84 40.5
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.1e-10 68.9 67 47.8
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 3.6e-10 68.2 58 53.4
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 8.1e-10 67.0 67 46.3
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.1e-09 66.6 82 45.1
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.4e-09 66.2 77 48.1
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-09 65.9 90 44.4
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.8e-09 65.9 43 60.5
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.8e-09 65.9 69 44.9
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.8e-09 65.9 98 37.8
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.4e-09 65.5 46 52.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.1e-09 65.1 68 42.6
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 9.0e-09 63.5 85 38.8
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.2e-08 63.2 65 47.7
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.2e-08 63.2 44 52.3
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.5e-08 62.8 78 46.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.0e-08 62.4 43 55.8
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.0e-08 62.4 69 43.5
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 2.0e-08 62.4 71 45.1
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.4e-08 61.2 45 53.3
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 4.4e-08 61.2 43 55.8
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 7.6e-08 60.5 76 44.7
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.9e-08 60.1 68 42.6
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.3e-07 59.7 74 44.6
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.7e-07 59.3 72 41.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.2e-07 58.9 75 37.3
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.2e-07 58.9 78 47.4
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 2.9e-07 58.5 73 42.5
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.8e-07 58.2 68 41.2
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.9e-07 57.8 80 37.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 4.9e-07 57.8 41 51.2
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 6.4e-07 57.4 77 36.4
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 6.4e-07 57.4 39 53.8
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 6.4e-07 57.4 39 53.8
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 3.2e-06 55.1 93 36.6
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 4.2e-06 54.7 86 38.4
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 4.2e-06 54.7 71 42.3
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 5.4e-06 54.3 77 42.9


User provided reference genes

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