Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.2e-226 787.7 409 100.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-220 768.5 409 97.8
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.8e-219 764.6 409 97.3
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.6e-217 759.2 409 96.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-197 692.2 409 90.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-196 688.7 409 90.0
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 8.6e-195 683.7 420 87.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.6e-186 654.4 420 84.5
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.4e-167 592.0 418 75.4
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.1e-165 587.0 420 74.5
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 4.8e-161 571.6 420 72.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.3e-155 553.5 420 71.4
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.3e-155 553.5 420 71.4
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.9e-154 549.7 420 69.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 7.4e-154 547.7 419 71.1
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.3e-152 541.6 420 70.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 6.9e-152 541.2 417 70.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.0e-151 539.7 420 70.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.6e-151 537.7 420 68.6
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 9.9e-151 537.3 418 69.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.2e-150 536.2 420 68.6
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-149 533.5 420 68.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 3.2e-149 532.3 420 67.6
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.1e-148 529.6 420 68.1
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.9e-147 525.4 420 66.7
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-146 523.5 420 68.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.6e-145 520.0 420 66.4
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.8e-145 519.2 421 66.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 3.7e-145 518.8 420 66.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 5.3e-144 515.0 420 65.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-143 513.5 420 66.2
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.6e-143 512.7 409 66.3
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.6e-143 512.7 419 66.3
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 6.5e-142 508.1 418 65.6
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 8.4e-142 507.7 438 63.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 8.4e-142 507.7 421 65.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.1e-141 507.3 417 64.7
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.4e-141 506.9 418 65.1
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 3.2e-141 505.8 419 64.9
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.2e-141 505.4 422 65.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.2e-141 505.4 415 65.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 9.3e-141 504.2 420 65.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 9.3e-141 504.2 420 66.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.2e-140 503.8 421 66.5
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.2e-140 503.8 417 64.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.6e-140 503.4 420 64.0
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.6e-140 503.4 417 64.7
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.6e-140 503.4 417 64.5
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 3.5e-140 502.3 420 64.5
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.6e-140 501.9 418 64.1
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.6e-140 501.9 420 66.4
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 6.1e-140 501.5 417 64.3
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.1e-140 501.5 420 65.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.9e-140 501.1 420 64.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-139 500.0 417 65.2
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-139 500.0 417 65.2
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.0e-139 499.2 419 64.2
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.9e-139 498.8 418 64.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.1e-139 498.4 416 65.6
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 6.7e-139 498.0 412 64.6
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.1e-138 497.3 420 65.5
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.9e-138 496.5 412 65.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 5.7e-138 495.0 419 64.0
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.7e-138 495.0 415 64.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 9.7e-138 494.2 420 66.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 9.7e-138 494.2 420 65.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.2e-137 493.0 427 63.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 3.7e-137 492.3 420 65.0
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.8e-137 491.9 425 65.4
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 6.3e-137 491.5 369 71.3
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 8.2e-137 491.1 421 65.3
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-136 490.0 420 64.5
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 9.0e-136 487.6 420 64.3
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 3.4e-135 485.7 415 63.9
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 7.7e-135 484.6 421 64.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.2e-132 477.2 369 69.1
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.7e-132 476.1 422 64.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.9e-131 472.2 420 61.9
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 5.1e-131 471.9 421 62.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 6.7e-131 471.5 417 63.3
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.0e-130 469.9 418 62.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.0e-130 469.9 368 68.8
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.5e-130 469.5 446 61.7
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.3e-130 468.8 417 62.6
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.3e-130 468.8 370 67.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.8e-129 466.1 418 62.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 6.3e-129 464.9 419 61.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 8.2e-129 464.5 417 62.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 5.3e-128 461.8 424 60.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 5.3e-128 461.8 417 62.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-127 460.3 417 62.1
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 3.4e-127 459.1 418 62.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 3.4e-127 459.1 418 62.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.7e-127 458.0 419 61.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.0e-126 457.6 419 60.9
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 8.5e-126 454.5 418 60.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.4e-125 453.8 418 60.5
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.5e-125 451.8 420 58.6
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 9.4e-125 451.1 414 61.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.6e-124 450.3 420 59.8
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.7e-124 448.7 414 61.8
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.9e-124 448.0 373 66.5
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.8e-123 446.8 414 61.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 8.8e-123 444.5 418 57.9
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.6e-122 443.0 420 58.6
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.4e-122 441.4 420 58.6
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.7e-121 440.3 420 58.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.2e-121 439.9 414 60.1
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.4e-120 437.2 422 58.5
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.9e-117 426.8 411 59.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.2e-117 426.0 415 57.8
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.0e-114 416.8 369 61.5
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 5.7e-114 415.2 409 58.2
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.8e-112 410.2 418 57.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.1e-112 409.1 329 71.4
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 6.1e-108 395.2 426 54.0
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.5e-106 390.6 411 54.5
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.6e-106 389.8 424 52.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 4.4e-106 389.0 420 52.9
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.3e-105 385.2 420 53.3
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 8.5e-102 374.8 409 52.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.2e-101 371.7 431 51.5
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.3e-99 366.7 411 53.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.5e-95 352.4 303 63.7
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.0e-86 324.7 327 52.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 3.4e-82 309.7 445 45.4
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.9e-81 305.8 258 64.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 6.2e-76 288.9 297 53.2
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 2.3e-75 287.0 470 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 2.4e-72 276.9 391 43.2
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.1e-62 242.7 418 39.5
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.2e-49 200.7 168 65.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.4e-49 199.1 144 77.8
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 5.4e-48 196.1 503 32.0
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.6e-45 186.0 131 75.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.0e-42 177.6 243 44.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 4.5e-42 176.4 128 77.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.2e-39 168.3 200 51.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 8.2e-28 129.0 149 53.7
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.2e-26 125.2 89 78.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-24 118.6 155 49.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.5e-24 116.3 414 28.7
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.5e-23 113.6 209 36.8
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.0e-22 110.5 138 51.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.7e-22 109.0 120 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.1e-19 102.1 213 35.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-18 98.2 89 59.6
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.4e-18 97.1 108 50.9
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.7e-17 94.7 79 67.1
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-17 93.2 127 51.2
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 8.5e-17 92.4 99 54.5
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 4.2e-16 90.1 127 49.6
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.5e-16 89.7 82 58.5
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 8.8e-14 82.4 106 44.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 4.3e-13 80.1 125 46.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.3e-12 78.6 44 86.4
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.7e-12 78.2 81 51.9
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.1e-11 75.5 49 69.4
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.7e-10 69.3 51 62.7
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-09 68.9 36 97.2
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.9e-09 67.4 42 81.0
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-08 65.5 100 44.0
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.3e-06 57.8 38 73.7
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 2.3e-06 57.8 77 42.9


User provided reference genes

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