Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.2e-33 147.1 169 100.0
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.6e-30 136.7 169 88.8
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 8.0e-30 134.4 169 85.8
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 7.5e-28 127.9 169 84.0
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 4.4e-20 102.1 170 81.8
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.2e-17 94.0 59 78.0
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 7.8e-17 91.3 59 74.6
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 2.3e-16 89.7 77 61.0
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 3.9e-16 89.0 77 62.3
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 3.3e-15 85.9 57 75.4
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 3.3e-15 85.9 62 67.7
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 3.3e-15 85.9 59 78.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.3e-15 85.5 59 76.3
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 4.3e-15 85.5 61 77.0
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 5.6e-15 85.1 59 78.0
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 7.3e-15 84.7 54 79.6
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 7.3e-15 84.7 59 76.3
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 9.5e-15 84.3 59 76.3
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 9.5e-15 84.3 59 67.8
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 1.6e-14 83.6 59 69.5
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.1e-14 83.2 60 73.3
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 2.1e-14 83.2 59 72.9
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 3.6e-14 82.4 59 74.6
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 3.6e-14 82.4 64 68.8
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 6.2e-14 81.6 59 72.9
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 8.1e-14 81.3 59 72.9
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 8.1e-14 81.3 59 71.2
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 1.4e-13 80.5 62 66.1
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 1.8e-13 80.1 59 71.2
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 1.8e-13 80.1 59 64.4
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.2e-13 78.6 61 70.5
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.2e-13 78.6 61 72.1
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 6.8e-13 78.2 58 70.7
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 6.8e-13 78.2 59 69.5
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.2e-12 77.4 58 69.0
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 1.2e-12 77.4 59 69.5
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 1.2e-12 77.4 61 68.9
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.5e-12 77.0 60 65.0
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.5e-12 77.0 74 55.4
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.5e-12 77.0 60 65.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.0e-12 76.6 61 72.1
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.0e-12 76.6 59 69.5
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 2.0e-12 76.6 57 63.2
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 2.6e-12 76.3 59 67.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.4e-12 75.9 60 70.0
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 3.4e-12 75.9 60 70.0
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 4.4e-12 75.5 63 61.9
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 5.8e-12 75.1 57 66.7
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.8e-12 75.1 57 71.9
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 5.8e-12 75.1 57 71.9
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 9.9e-12 74.3 75 57.3
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.3e-11 73.9 61 67.2
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.3e-11 73.9 60 68.3
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 3.7e-11 72.4 58 67.2
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 1.4e-10 70.5 60 65.0
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 2.4e-10 69.7 61 55.7
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.4e-10 69.7 64 62.5
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.4e-10 69.7 61 62.3
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 3.2e-10 69.3 52 69.2
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 7.1e-10 68.2 59 61.0
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 7.1e-10 68.2 48 72.9
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 9.2e-10 67.8 59 55.9
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 1.2e-09 67.4 62 61.3
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 1.2e-09 67.4 52 65.4
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 1.2e-09 67.4 52 65.4
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 1.2e-09 67.4 52 65.4
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 1.2e-09 67.4 52 65.4
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.2e-09 67.4 47 72.3
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 1.6e-09 67.0 60 65.0
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 2.1e-09 66.6 60 65.0
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 2.1e-09 66.6 67 58.2
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 3.5e-09 65.9 58 60.3
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 4.6e-09 65.5 63 60.3
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 7.8e-09 64.7 57 57.9
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 1.0e-08 64.3 64 56.2
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 1.0e-08 64.3 59 57.6
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 1.7e-08 63.5 48 66.7
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 1.7e-08 63.5 64 57.8
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 1.7e-08 63.5 65 56.9
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 2.3e-08 63.2 59 59.3
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 5.1e-08 62.0 53 62.3
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 7.3e-07 58.2 57 57.9
Lalb_Chr19g0135631 Lupinus albus HOM05D007783 ORTHO05D009740 1.2e-06 57.4 58 51.7
FAN02G1687 Fragaria x ananassa HOM05D007783 ORTHO05D009740 8.1e-06 54.7 175 68.6


User provided reference genes

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