Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.6e-141 504.2 244 100.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-116 423.3 244 88.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.9e-102 375.2 258 78.7
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.1e-93 347.1 244 75.4
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.8e-90 334.7 281 68.0
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.6e-79 300.1 245 66.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.8e-76 288.5 245 64.1
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 8.2e-76 287.7 247 63.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.0e-69 266.5 249 57.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 8.2e-68 261.2 245 58.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 9.1e-67 257.7 239 56.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.7e-66 254.6 230 58.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.2e-64 248.8 239 55.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.5e-64 248.4 232 58.6
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 7.2e-64 248.1 238 55.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.2e-63 247.3 237 56.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.6e-63 246.9 237 56.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.1e-63 246.5 246 52.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.6e-63 245.7 235 55.3
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 4.7e-63 245.4 236 57.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.8e-62 243.4 222 57.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.3e-62 243.0 220 57.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.7e-62 241.5 229 53.3
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 6.7e-62 241.5 230 56.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.1e-61 240.7 225 55.6
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.5e-61 240.4 246 54.1
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.0e-61 240.0 238 52.9
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.3e-60 237.3 235 55.3
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.8e-60 236.1 235 56.2
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.7e-60 235.7 234 54.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.8e-60 235.3 224 53.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.8e-59 233.4 235 53.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.4e-59 233.0 223 53.8
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 9.1e-59 231.1 206 60.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.2e-58 230.7 231 52.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.2e-58 230.7 251 51.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.0e-58 229.9 235 53.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.0e-58 229.9 245 51.8
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.6e-58 229.6 241 52.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.5e-58 229.2 250 50.8
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.5e-58 229.2 222 52.7
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 7.7e-58 228.0 248 50.8
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.0e-57 227.6 250 50.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.3e-57 227.3 264 50.4
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.2e-57 226.5 223 52.0
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.8e-57 225.7 236 52.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.5e-57 224.6 244 51.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.5e-56 223.0 242 51.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 5.5e-56 221.9 240 50.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 7.2e-56 221.5 233 52.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 7.2e-56 221.5 235 51.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.2e-55 220.7 234 52.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.6e-55 220.3 239 51.9
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.7e-55 219.5 154 79.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 3.6e-55 219.2 225 52.0
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.7e-55 218.8 250 49.2
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.1e-55 218.4 244 50.8
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 8.0e-55 218.0 237 49.4
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-54 217.2 230 52.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 5.2e-54 215.3 246 49.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 7.5e-53 211.5 234 49.1
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.2e-52 209.9 234 50.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.8e-52 209.5 225 48.9
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 6.3e-52 208.4 230 49.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 8.2e-52 208.0 230 49.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.4e-51 207.2 158 60.8
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.8e-51 206.8 230 49.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.4e-51 206.5 247 47.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.1e-51 206.1 228 48.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 3.1e-51 206.1 230 49.1
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-51 206.1 229 47.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 5.3e-51 205.3 232 49.6
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.3e-51 205.3 234 48.7
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.0e-50 203.4 223 47.1
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.5e-50 202.2 199 54.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.0e-49 201.1 155 61.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.3e-49 200.7 237 47.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.7e-49 200.3 235 43.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.7e-49 200.3 230 48.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.2e-49 199.9 228 46.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.2e-49 199.9 242 49.2
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.8e-49 199.1 200 55.5
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 6.5e-49 198.4 234 44.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.1e-48 197.6 218 47.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-48 196.8 215 48.8
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.2e-48 196.1 230 48.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 5.5e-48 195.3 226 45.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 5.5e-48 195.3 226 45.1
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 5.5e-48 195.3 223 45.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.2e-47 194.1 229 48.0
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-47 193.7 215 47.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.6e-47 192.6 249 47.8
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 4.7e-47 192.2 239 45.2
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 6.1e-47 191.8 233 45.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.1e-47 191.8 235 48.1
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 6.1e-47 191.8 228 49.1
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-46 190.7 220 48.2
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.8e-46 190.3 227 45.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.8e-46 190.3 227 45.4
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-46 189.1 220 47.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.0e-46 189.1 222 48.6
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 5.2e-46 188.7 239 44.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 5.2e-46 188.7 215 46.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.8e-46 188.3 230 45.7
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 8.8e-46 188.0 233 44.2
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.2e-45 187.6 225 45.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 5.7e-45 185.3 216 45.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.5e-45 184.9 223 41.7
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.2e-44 183.3 229 45.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-44 183.0 220 45.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.8e-44 183.0 220 46.4
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.8e-44 182.2 243 46.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-43 181.0 150 61.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.1e-43 179.1 214 43.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 9.1e-43 177.9 133 60.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.6e-42 177.2 254 41.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 4.5e-42 175.6 213 47.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.9e-42 175.3 256 42.2
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.3e-41 173.3 211 46.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 5.0e-41 172.2 204 43.6
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-38 164.5 248 39.1
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 6.8e-38 161.8 120 64.2
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.2e-36 156.8 121 59.5
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 4.9e-36 155.6 146 47.3
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.8e-35 153.7 146 47.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.8e-35 153.7 243 38.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.0e-30 137.9 230 41.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.9e-30 134.8 221 41.2
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 8.9e-30 134.8 143 41.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.3e-28 131.0 224 37.9
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.1e-23 113.6 160 39.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.6e-21 106.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.2e-20 103.6 92 48.9
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.2e-15 85.5 95 43.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.1e-14 84.7 50 76.0
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.8e-14 84.0 156 37.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.4e-13 79.3 105 41.9
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 5.8e-13 79.0 44 68.2
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.5e-13 78.6 66 51.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.7e-12 76.3 108 38.0
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.4e-11 73.6 65 49.2
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.7e-10 70.1 56 46.4
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.3e-09 67.0 35 68.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 3.0e-09 66.6 132 41.7
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.3e-08 63.2 139 31.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.6e-07 60.8 47 51.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.7e-07 59.3 170 25.9
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.1e-06 56.6 106 36.8
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 4.0e-06 56.2 23 87.0


User provided reference genes

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